Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30118
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    28   0.086
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.35 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.35 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.46 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    26   0.46 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.9  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 28.3 bits (60), Expect = 0.086
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 173 LHQRSEERDFLFNAVETLPCVKKKADWVYSGLQARLQHL 289
           +++ S E D  +   +   CV K   W Y G Q  L+H+
Sbjct: 144 IYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHI 182


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 173 LHQRSEERDFLFNAVETLPCVKKKADWVYSGLQARLQHL 289
           +++ S E D  +   +   CV K   W Y G +  L+H+
Sbjct: 148 IYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHM 186


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 230 CVKKKADWVYSGLQARLQHL 289
           C+ K   W Y+G Q  L+H+
Sbjct: 172 CIMKFGSWTYNGAQVDLKHM 191


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 197 DFLFNAVETLPCVKKKADWVYSGLQARLQHL 289
           D  F   +   CV K   W Y G +  L+H+
Sbjct: 156 DVEFFPYDVQTCVLKLGSWTYDGFKVDLRHM 186


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 173 LHQRSEERDFLFNAVETLPCVKKKADWVYSGLQARLQHL 289
           + + S E D  +   +   C  K   W Y G+Q  L+H+
Sbjct: 140 IFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGIQIDLKHI 178


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 230 CVKKKADWVYSGLQARLQ 283
           CV K A W Y G Q  L+
Sbjct: 145 CVLKWASWTYDGYQLELE 162


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 230 CVKKKADWVYSGLQARLQHLVK 295
           C  K   W Y G    L+HL +
Sbjct: 159 CFMKFGSWTYDGYTVDLRHLAQ 180


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -3

Query: 216 TALNRKSLSSD---L*CRYL*AGNTFQNEHFPWLSGSHRNILP 97
           T L    L SD   L CR + A  T +N   P+L GS R   P
Sbjct: 375 TILTTPGLDSDGIRLPCREVEAAATARNVVAPFLIGSRRTSPP 417


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 309 CSCRRNLFLRQFCFHLLAQKAGPYAGTYI 395
           C C + + L+   +H+L      Y+G  I
Sbjct: 609 CRCVKGILLKSGLYHVLRGNENIYSGKLI 637


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 376 LMPGLTFSNELISRDEGLHTDF 441
           ++PG+T  N  +S+   L TDF
Sbjct: 461 ILPGVTIQNVDVSQLVTLFTDF 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,675
Number of Sequences: 438
Number of extensions: 4604
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)