Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30116
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 0.001
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 36 0.004
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.007
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.021
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.027
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 33 0.036
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.063
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 31 0.11
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 31 0.15
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.15
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 30 0.25
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 30 0.34
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 30 0.34
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 30 0.34
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 30 0.34
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 28 1.0
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.0
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 2.4
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 27 2.4
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 27 2.4
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 26 4.1
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 26 4.1
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 26 4.1
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 26 4.1
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 26 4.1
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 26 4.1
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 26 4.1
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 9.5
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 25 9.5
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 25 9.5
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 25 9.5
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +2
Query: 269 INKIFSKFGKIVN---EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
+ ++FSKFG+I + YP+T+ ++ GY F+ +S+P A +A+ N K+ F+
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTE--ISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 281 FSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
FSKF + + +TD+ T + F+ + N +A A+ + N
Sbjct: 46 FSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADNAIASLN 87
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = +2
Query: 272 NKIFSKFGKIVNE--YYPTTD-NG--LTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTF 436
+K+ +K GK+ Y P + NG ++ G +F ++ N A V+ + ++ K HTF
Sbjct: 63 SKVLAKIGKVKENGFYMPFEEKNGKKMSLGLVFADFENVDGADLCVQELDGKQILKNHTF 122
Query: 437 LVNLFTDFQKYSDIPKEWEPPAPQHSRCSQILQWV 541
+V +K P E+ + + W+
Sbjct: 123 VVRKLNQLEKAFSTPDEFSFEEREFKEREHLRSWL 157
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 35.5 bits (78), Expect = 0.007
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNG-LTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
I +IF +G I + + P L GY ++EY AA AV NN +LD + F+
Sbjct: 115 IAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFV 172
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.9 bits (74), Expect = 0.021
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 281 FSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
FSKFGK+ PT G G+ F+ + + A EA+ + N ++D
Sbjct: 128 FSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEID 174
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.5 bits (73), Expect = 0.027
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTF 436
++ I ++++ GK V + G+ GY F+E+++P A+ A+ N H F
Sbjct: 106 EAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLF 165
Query: 437 LVN 445
+N
Sbjct: 166 KLN 168
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 33.1 bits (72), Expect = 0.036
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = +2
Query: 281 FSKFGKIVNEYYP----TTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
FS +G +++ P T ++GL TG +F+ YS+ ++A A++ CK +
Sbjct: 448 FSNYGPLIDIKIPRSIGTRNSGLGTGKVFVRYSDIRSAEVAMEEMKGCKFN 498
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 32.3 bits (70), Expect = 0.063
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
+S++ F FG+I++ + + Y F+E+ P++A EA++ N
Sbjct: 19 ESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.5 bits (68), Expect = 0.11
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVNEYYPTTD-NGLTTGYIFLEYSNPQNAAEAVKATNN 409
+ V+ FS G++V D NG + GY F+ Y + + A A++A NN
Sbjct: 112 ERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNN 162
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 278 IFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
IFS+FGKI++ + + G + Y F+E+ N ++ +A N +D
Sbjct: 263 IFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLID 311
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCK 415
+ + + G ++N NGL+ G +EYS + A A+K +N K
Sbjct: 82 LKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQK 130
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 377 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 475
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIVKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 377 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 475
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 29.9 bits (64), Expect = 0.34
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
++ FS FGKI++ + G GY F+ + + ++A A++ N L+ + ++
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/72 (20%), Positives = 34/72 (47%)
Frame = +2
Query: 278 IFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNLFTD 457
+F +FG+I + N G+ F+ Y+N + A +AV N+ + + ++
Sbjct: 280 LFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKK 339
Query: 458 FQKYSDIPKEWE 493
++ ++ K +E
Sbjct: 340 HEREEELRKRYE 351
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 377 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 475
N + K N K DK FL NLFT+F K+ D
Sbjct: 50 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 82
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 377 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 475
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLDNLFTEFSKFHD 62
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = -3
Query: 153 FFFRNLYEILWVVKIRFFFKVLFLIV 76
FFFRNL++I++V+ + + +F+I+
Sbjct: 1022 FFFRNLFQIVFVLAVICYSSPMFMIL 1047
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDN-GLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQ 427
+ +F+ FG + N + G GY +EY+ + A +AV N LD++
Sbjct: 26 VEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEK 79
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 618 PHLGEANTSPQMPNKELVHRHQDPLN 541
PH +T P + NKE ++R +D L+
Sbjct: 1339 PHFSGRDTCPMLRNKEAIYRLKDSLS 1364
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/43 (27%), Positives = 29/43 (67%)
Frame = +3
Query: 444 IFSRTFKSIQIFQKNGSHRHLNIPGAVRFCNGYLMDPDAYEPV 572
+ S++ ++ +F+K+ S +HL+I + + NG ++D +A+ P+
Sbjct: 188 VVSKSLQTEGLFRKSCSRKHLDIVIEL-YDNGCMVDLEAFGPI 229
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 27.1 bits (57), Expect = 2.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 629 KEFCHTWEKPTP 594
KE+CH WE+P P
Sbjct: 347 KEWCHLWEQPEP 358
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYP 319
+++ +N +F++F K N YYP
Sbjct: 74 KIKEFLNDLFTEFSKFHNSYYP 95
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYP 319
+++ +N +F++F K N YYP
Sbjct: 74 KIKEFLNDLFTEFSKFHNSYYP 95
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYP 319
+++ +N +F++F K N YYP
Sbjct: 74 KIKEFLNDLFTEFSKFHNSYYP 95
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYP 319
+++ +N +F++F K N YYP
Sbjct: 74 KIKEFLNDLFTEFSKFHNSYYP 95
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 279 ILFITLCSSQDARGRLRTRVYDYNVFITVRFLRLLF*DIRQ 157
+L+ S D R + R YD NV + LLF D+++
Sbjct: 586 LLWYPSMGSADVRVNFKDRKYDLNVSTIASVILLLFQDLKE 626
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYP 319
+++ +N +F++F K N YYP
Sbjct: 74 KIKEFLNDLFTEFSKFHNSYYP 95
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -3
Query: 444 FTKNVCCLSNLQLFVAFTASAAFCGLLYSRKMYPVVSPLSVVG*YSL-TILPNLLNILFI 268
F + CL++ + AF G RK+ P PL+ + +L TI+ LL ++ +
Sbjct: 348 FNCSALCLASSREIFAFARDKGLPGSWIFRKLTPGGIPLNAILLVNLYTIIVGLLMLVNV 407
Query: 267 TLCSS 253
T SS
Sbjct: 408 TAISS 412
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 296 KIVNEYYPTTDNGLTTGY-IFLEYSNPQNAAEAVK 397
K +N+YYP+ D + GY + + Q A EA +
Sbjct: 761 KNLNDYYPSWDQRVEAGYKLAAQQKAEQEAREAAE 795
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 444 FTKNVCCLSNLQLFVAFTASAAFCGLLYSRKMYPVVSPLSVV 319
F KN+ ++++ A+ S AFCG L ++PV + S+V
Sbjct: 202 FKKNLIA-NDVKPHFAYAFSGAFCGALSWILVFPVDTAKSIV 242
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 282 NILFITLCSSQDARGRLRTRVYDYNVF 202
N+ I C S D+RG L+TR Y++ F
Sbjct: 39 NLQVIKACQSLDSRGYLKTR-YNWGWF 64
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 282 NILFITLCSSQDARGRLRTRVYDYNVF 202
N+ I C S D+RG L+TR Y++ F
Sbjct: 39 NLQVIKACQSLDSRGYLKTR-YNWGWF 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,066
Number of Sequences: 5004
Number of extensions: 58388
Number of successful extensions: 208
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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