Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30116
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 76 2e-14
08_02_0162 + 13464698-13464974,13465719-13465837,13465920-134665... 38 0.009
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549... 38 0.009
04_04_1627 - 34867557-34870095,34870159-34870391,34871274-34871276 36 0.021
03_02_0555 + 9431451-9431688,9432685-9432803,9432886-9433079,943... 34 0.086
10_08_0254 + 16236689-16236793,16237760-16237808,16237988-162380... 32 0.35
04_04_0435 - 25170348-25170593,25170989-25171189,25171580-251717... 32 0.35
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 31 1.1
01_01_0160 + 1382646-1383162,1383255-1383402,1383475-1383958,138... 31 1.1
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 30 1.9
05_01_0290 + 2270749-2271037,2272227-2272363,2272660-2272805,227... 29 2.4
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 2.4
07_03_1175 - 24555965-24556117,24557809-24558264,24558270-245584... 29 3.2
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 29 3.2
03_05_0066 - 20455976-20456161,20456251-20456347,20456608-204567... 29 3.2
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 29 4.3
07_03_1316 + 25736931-25737206,25737276-25737329,25738036-257381... 29 4.3
10_07_0076 - 12635577-12635693,12635814-12635989,12636358-126364... 27 9.9
09_01_0079 - 1159963-1160211,1160303-1160509,1160631-1160801,116... 27 9.9
03_02_0967 + 12786219-12786305,12786716-12786781,12786897-127869... 27 9.9
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 76.2 bits (179), Expect = 2e-14
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNE--YYPTT-DNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDK 424
+L++VI KI+S+ G I + P + T GY F+EY+ PQ A A + TN KLDK
Sbjct: 78 KLENVIRKIYSQIGAIKEGGLWMPVNPETKKTYGYCFIEYNTPQEAELAREKTNGYKLDK 137
Query: 425 QHTFLVNLFTDFQKYSDIPKEWEP 496
H F VN+F DF KY +P EW P
Sbjct: 138 SHIFAVNMFDDFDKYMKVPDEWMP 161
>08_02_0162 +
13464698-13464974,13465719-13465837,13465920-13466579,
13466686-13466763,13466849-13466938,13467241-13467378,
13467730-13467738
Length = 456
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/75 (24%), Positives = 38/75 (50%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 448
+ +IF KFG I + +G + + F+ + NP +AA AV+ N K D + ++
Sbjct: 234 LKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRA 293
Query: 449 FTDFQKYSDIPKEWE 493
++ ++ +++E
Sbjct: 294 QKKSEREMELKEKFE 308
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 278 IFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
+FS+ G +V+ + L+ GY ++ +S+P +AA A++ N
Sbjct: 58 VFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEMLN 101
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 281 FSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
FS FG I++ T +G + GY F+++ + A A+ N L+ + ++
Sbjct: 147 FSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYV 199
>06_03_0614 -
22753092-22753349,22754059-22754277,22754712-22754960,
22755186-22755275,22755379-22755456,22755562-22756337,
22757042-22757384
Length = 670
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +2
Query: 275 KIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNLF 451
++FS FG I++ T NG + GY F+++ + +A +A+ N + Q F V LF
Sbjct: 167 EMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIF-VGLF 224
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/71 (21%), Positives = 31/71 (43%)
Frame = +2
Query: 281 FSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNLFTDF 460
FS FG I + NGL+ + F+ + + A AVK N + ++
Sbjct: 260 FSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKS 319
Query: 461 QKYSDIPKEWE 493
++ +++ ++E
Sbjct: 320 ERQAELKAKFE 330
>04_04_1627 - 34867557-34870095,34870159-34870391,34871274-34871276
Length = 924
Score = 36.3 bits (80), Expect = 0.021
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 278 IFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
+F FG++ N + GL+ GY F++YS+P +AAEAV N +D
Sbjct: 323 LFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVD 371
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 275 KIFSKFGKIV-NEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
++F FG+IV + GL+ GY F++YS+P+ A+EA+K N
Sbjct: 227 ELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMN 271
>03_02_0555 +
9431451-9431688,9432685-9432803,9432886-9433079,
9433174-9433430,9433544-9433650,9433715-9433888,
9434359-9434490,9434776-9434955,9435062-9435265
Length = 534
Score = 34.3 bits (75), Expect = 0.086
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
+ +I FS++G +++ D+G + G+ F+ + NP++A A ++ N L + ++
Sbjct: 217 EELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYV 276
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/47 (25%), Positives = 29/47 (61%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNN 409
+ ++F KFG I++ ++G + GY F++++ ++A +++ NN
Sbjct: 130 LQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNN 176
>10_08_0254 +
16236689-16236793,16237760-16237808,16237988-16238076,
16238178-16238234,16238684-16238746,16238828-16238893,
16239520-16239606,16239691-16239784,16240351-16240673,
16241022-16241048,16241065-16241145,16241445-16241476,
16242126-16242266,16242455-16242516,16243170-16243387
Length = 497
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVNEYYPTTD-NGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
+ ++ ++F + G +VN Y P L GY F+E+ + ++A A+K N KL
Sbjct: 38 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKILNMIKL 91
>04_04_0435 -
25170348-25170593,25170989-25171189,25171580-25171756,
25172284-25172418,25173131-25173262,25173292-25173369,
25173452-25174108,25174210-25174328,25175897-25176173
Length = 673
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
++ FS FG I++ T + G + G+ F++Y + A A+K+ N ++ + ++
Sbjct: 143 LHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV 199
>01_01_0161 -
1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 436 FSESFHGLSKVFRYSKRMGATGTSTFQVQSDSAMGI*WILMPMNQFLVWHLGTGVGFSQV 615
F ++ L +VFR + S V S + G W LMPM+ + W + F +
Sbjct: 43 FQSIYNWLMRVFRIDSEVHTMSVSV--VVSRATEGYFWELMPMHSTVAWKRYLEMAFERS 100
Query: 616 W 618
W
Sbjct: 101 W 101
>01_01_0160 +
1382646-1383162,1383255-1383402,1383475-1383958,
1383986-1384084
Length = 415
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 436 FSESFHGLSKVFRYSKRMGATGTSTFQVQSDSAMGI*WILMPMNQFLVWHLGTGVGFSQV 615
F ++ L +VFR + S V S + G W LMPM+ + W + F +
Sbjct: 43 FQSIYNWLMRVFRIDSEVHTMSVSV--VVSRATEGYFWELMPMHSTVAWKRYLEMAFERS 100
Query: 616 W 618
W
Sbjct: 101 W 101
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 287 KFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNN 409
K G +V ++ NGL G +L+Y PQ+AA K +N
Sbjct: 86 KDGTVVLQFEVRLQNGLECGGAYLKYIRPQDAAWDAKEFDN 126
>05_01_0290 +
2270749-2271037,2272227-2272363,2272660-2272805,
2272853-2272877
Length = 198
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDN-GLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
++ IF FG++ N + G GY +EY + A A+KA + +L
Sbjct: 117 LHNIFRDFGQVKNLHLNLDRRTGFVKGYALIEYETFEEAQAAIKALDGTEL 167
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 278 IFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
+FS+FG+IV + G + GY F++YS+ A A+ A N L+
Sbjct: 326 LFSQFGEIVMAKVIRDRITGQSKGYGFVKYSDVSQANAAIAAMNGYHLE 374
>07_03_1175 -
24555965-24556117,24557809-24558264,24558270-24558436,
24558468-24558756,24559620-24559726,24559841-24559909,
24560001-24560109
Length = 449
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 263 SVINKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKA 400
+ + +FS +G ++ D G + GY F+ Y++ + AA AV A
Sbjct: 45 TTLKDVFSHYGDVLEARIIIDRDTGKSKGYGFITYTSSEEAAAAVTA 91
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPT-TDNGLTTGYIFLEYSNPQNAAEAVKATN 406
I IFS G I + P +D+G + G+ F+ ++ Q+A A+K N
Sbjct: 334 IMDIFSLAGFIWDVSIPQKSDDGASKGFAFVSFTRKQDAENAIKNVN 380
>03_05_0066 -
20455976-20456161,20456251-20456347,20456608-20456738,
20456814-20456869,20457498-20457543
Length = 171
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 266 VINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQ 427
V+ + FS +G++V P G G F++YSN +A EA++ N +L Q
Sbjct: 48 VLKQAFSPYGELVYVKIPV---GKRCG--FVQYSNRASAEEAIRMLNGSQLGGQ 96
>10_08_0747 - 20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVNE----YYPTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
+S I K+FS FGKI+ E + G GY F++Y+ + A A + N
Sbjct: 882 ESDIIKMFSPFGKIIAEDFLWHTRGPKRGEPRGYAFVQYTTKEEAQLAKEKMN 934
>07_03_1316 +
25736931-25737206,25737276-25737329,25738036-25738189,
25740235-25740313,25740413-25740492,25740588-25740654,
25741548-25741619,25742071-25742223,25742309-25742392,
25742811-25742877
Length = 361
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYP-TTDNGLTTGYIFLEYSNPQNAAEAV 394
++ +F K+G++V+ Y P G + G+ F+ Y A +AV
Sbjct: 168 LSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAV 210
>10_07_0076 -
12635577-12635693,12635814-12635989,12636358-12636493,
12636714-12636929,12637021-12637134,12637456-12637559,
12638417-12638687
Length = 377
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 474 IFQKNGSHRHLNIPGAVRFCNGYLMDPDAYEPVPCLAFGDW 596
+FQ NG+H +N+ G R+ +DP A++ C+ F ++
Sbjct: 161 VFQVNGNHETINVEGDYRY-----VDPGAFD--ECIRFMEY 194
>09_01_0079 -
1159963-1160211,1160303-1160509,1160631-1160801,
1161732-1161869,1162184-1162273,1162354-1162431,
1162510-1163166,1163245-1163363,1164305-1164584
Length = 662
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +2
Query: 281 FSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
F FG I++ T +G + GY F++Y + A A+ N ++ + ++
Sbjct: 148 FCVFGNILSCKVATDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYV 200
>03_02_0967 +
12786219-12786305,12786716-12786781,12786897-12786971,
12787054-12787162,12787253-12787299,12787396-12787453,
12788193-12788242,12788459-12788504,12788758-12788808,
12789376-12789478,12789923-12789956,12790210-12790224
Length = 246
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
+ +F K+G+IV+ GY F+E+ +P++A EA + D
Sbjct: 23 VEDLFYKYGRIVDIDLKIPPR--PPGYAFVEFEDPRDAEEACAGRDGYNFD 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,453,302
Number of Sequences: 37544
Number of extensions: 364081
Number of successful extensions: 867
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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