Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30116
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.) 98 6e-21
SB_29106| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.038
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.050
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 34 0.088
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.62
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 29 2.5
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 29 3.3
SB_36987| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_30587| Best HMM Match : IncA (HMM E-Value=0.42) 28 5.8
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 28 7.6
SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026) 28 7.6
>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 97.9 bits (233), Expect = 6e-21
Identities = 46/99 (46%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHT 433
+L++VI K+FSKFG+IV E+YP + LT GYIFLE+SN +A AVK N KLDK H
Sbjct: 89 KLKNVIRKVFSKFGQIVTEHYPM-EKDLTRGYIFLEFSNASDAVRAVKTANGYKLDKHHI 147
Query: 434 FLVNLFTDFQKYSDIPKEWEPPAPQ-HSRCSQILQWVFN 547
F VN F DF K + +EW+ P Q + + + W+ +
Sbjct: 148 FAVNHFEDFNKLLSLKEEWQEPTKQPYEQQENLRSWLLD 186
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 154 LLADILEQKPKESDGYENVVVVDACPQSAP 243
LL DIL QKP E++G + ++VVD P+ P
Sbjct: 55 LLGDILRQKPSETEGTDCIIVVDNVPKVGP 84
>SB_29106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 154 LLADILEQKPKESDGYENVVVVDACPQSAP 243
LL DIL QKP E++G + ++VVD P+ P
Sbjct: 55 LLGDILRQKPSETEGTDCIIVVDNVPKVGP 84
Score = 36.3 bits (80), Expect = 0.022
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYP 319
+L++VI K+FSKFG+IV E+YP
Sbjct: 89 KLKNVIRKVFSKFGQIVTEHYP 110
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQ 427
Q I KIF G + + + G + GY F+ Y NP +A +AV+ N +L +
Sbjct: 40 QEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNK 96
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 35.5 bits (78), Expect = 0.038
Identities = 25/86 (29%), Positives = 38/86 (44%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
+S I ++FSK G + T G GY ++EY +A+ AV + ++ K T
Sbjct: 184 ESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLDKTEV-KGRTIS 242
Query: 440 VNLFTDFQKYSDIPKEWEPPAPQHSR 517
V L + +E PP P SR
Sbjct: 243 VALSNPPTRRGPPRQEHPPPPPPGSR 268
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 35.1 bits (77), Expect = 0.050
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 257 LQSVINKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
L+ I +F FGK+V+ G GY F+EY N Q+A +A+ + N
Sbjct: 211 LEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMN 261
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 34.3 bits (75), Expect = 0.088
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPT-TDNGLTTGYIFLEYSNPQNAAEAVKATN 406
+ K+FS+FGK++ P NG G+ F+E+ + Q A V+ N
Sbjct: 104 LKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFN 150
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 335 LTTGYIFLEYSNPQNAAEAVKATNNCKL 418
L T Y F+EY +P++A EA++ NN KL
Sbjct: 37 LKTAYGFIEYEDPRDAEEAMRRENNRKL 64
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
+ +I ++ GKIV+ T G + G+ F+ + P+ A EAV N
Sbjct: 125 MKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLN 170
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 281 FSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
FS +G I + D G + G+ F+ +S+P+ A +AV N
Sbjct: 232 FSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMN 273
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 308 EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNN 409
E ++ G G+ F+E++N + A A++ATNN
Sbjct: 613 ERLDSSGKGRPLGFAFVEFTNHKEALAALRATNN 646
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDN-GLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
I+++FS +G+I N + G GY +EY + A A++A N ++
Sbjct: 309 IHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEM 359
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVNEYYPTTD-NGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
+++I ++F + G +VN + P L GY F+E+ ++A A+K N K+
Sbjct: 26 EALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKV 79
>SB_36987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 379 ILWVTVFQENVPSRESIVSRGVVFVDYFTEFTKYFVY 269
ILW T F+ ++P I V+FV +F VY
Sbjct: 295 ILWYTNFEHHLPLDVEIAGLAVIFVFFFAGVAMMVVY 331
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 329 NGLTTGYIFLEYSNPQNAAEAVKATNN 409
+GLT G+ F +SN A AVK +N
Sbjct: 189 SGLTKGFAFCTFSNKDEAQNAVKKLDN 215
>SB_30587| Best HMM Match : IncA (HMM E-Value=0.42)
Length = 272
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 342 VVSPLSVVG*YSLTILPNLLNILFITLCSSQD 247
VV+P++V +LP+ LN+LF+ LC +D
Sbjct: 106 VVAPVTVA--VVAAVLPSKLNLLFVLLCRVED 135
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 269 INKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
+ +IFS+ G +++ + G GY F EY + + A A++ N +L+
Sbjct: 41 LKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELN 92
>SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026)
Length = 453
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -2
Query: 241 GPTADTRLRL-QRFHNRQIP*ASVLRYPPIILLQESLRNPLGRQNQVLLQSSVPHCHFEE 65
G A T LRL +R + ++P R+ P+ILL N +GR+ Q S + H +
Sbjct: 57 GSGAQTWLRLDKRVLDHELP-----RHDPLILLFAVRTNSIGRKQQPSASSMMVHVWYAS 111
Query: 64 LDSLFHRLFS 35
+L ++S
Sbjct: 112 TSTLAKAMWS 121
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,133,864
Number of Sequences: 59808
Number of extensions: 423550
Number of successful extensions: 1075
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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