Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30116
(653 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U78525-1|AAC99479.1| 814|Homo sapiens eukaryotic translation in... 111 2e-24
U62583-1|AAB42010.1| 873|Homo sapiens Prt1 homolog protein. 111 2e-24
BC110865-1|AAI10866.1| 814|Homo sapiens eukaryotic translation ... 111 2e-24
BC009986-1|AAH09986.1| 622|Homo sapiens Unknown (protein for IM... 111 2e-24
BC001173-1|AAH01173.1| 814|Homo sapiens EIF3S9 protein protein. 111 2e-24
AC004971-1|AAP21880.1| 385|Homo sapiens unknown protein. 111 2e-24
U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding pro... 36 0.17
U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding... 36 0.17
D12799-1|BAA02244.1| 193|Homo sapiens polyadenylate binding pro... 36 0.17
BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein. 36 0.17
BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein. 36 0.17
BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein. 36 0.17
AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein... 36 0.17
AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein... 36 0.17
AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein... 36 0.17
AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein... 36 0.17
AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein... 36 0.17
AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein... 36 0.17
L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein. 35 0.29
BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,... 35 0.29
BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,... 35 0.29
BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,... 35 0.29
AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor... 35 0.29
AF247662-1|AAF72519.1| 228|Homo sapiens SR-related protein LD2 ... 35 0.29
AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein. 35 0.29
U38175-1|AAB41913.1| 326|Homo sapiens HuR RNA binding protein p... 32 1.6
BT009793-1|AAP88795.1| 326|Homo sapiens ELAV (embryonic lethal,... 32 1.6
BC003376-1|AAH03376.1| 326|Homo sapiens ELAV (embryonic lethal,... 32 1.6
BC130519-1|AAI30520.1| 594|Homo sapiens apobec-1 complementatio... 32 2.1
BC054873-1|AAH54873.1| 122|Homo sapiens ACF protein protein. 32 2.1
AL589794-7|CAI15763.1| 586|Homo sapiens APOBEC1 complementation... 32 2.1
AL589794-6|CAI15764.1| 594|Homo sapiens APOBEC1 complementation... 32 2.1
AL589794-5|CAI15762.1| 594|Homo sapiens APOBEC1 complementation... 32 2.1
AL512366-4|CAI14236.1| 586|Homo sapiens APOBEC1 complementation... 32 2.1
AL512366-3|CAI14235.1| 594|Homo sapiens APOBEC1 complementation... 32 2.1
AL512366-2|CAI14234.1| 201|Homo sapiens APOBEC1 complementation... 32 2.1
AL512366-1|CAI14233.1| 594|Homo sapiens APOBEC1 complementation... 32 2.1
AJ272079-1|CAB94755.1| 586|Homo sapiens APOBEC-1 stimulating pr... 32 2.1
AJ272078-1|CAB94754.1| 594|Homo sapiens APOBEC-1 stimulating pr... 32 2.1
AF271790-1|AAF76222.1| 569|Homo sapiens APOBEC-1 complementatio... 32 2.1
AF271789-1|AAF76221.1| 586|Homo sapiens APOBEC-1 complementatio... 32 2.1
AF209192-1|AAF34824.1| 586|Homo sapiens Apobec-1 complementatio... 32 2.1
U51586-1|AAB41656.1| 541|Homo sapiens siah binding protein 1 pr... 31 2.7
CR457143-1|CAG33424.1| 559|Homo sapiens SIAHBP1 protein. 31 2.7
BC024208-1|AAH24208.1| 423|Homo sapiens RNA binding motif prote... 31 2.7
BC011979-1|AAH11979.1| 516|Homo sapiens SIAHBP1 protein protein. 31 2.7
BC011265-1|AAH11265.1| 516|Homo sapiens SIAHBP1 protein protein. 31 2.7
BC009734-1|AAH09734.1| 499|Homo sapiens SIAHBP1 protein protein. 31 2.7
BC008875-1|AAH08875.1| 542|Homo sapiens fuse-binding protein-in... 31 2.7
BC002566-1|AAH02566.1| 424|Homo sapiens RNA binding motif prote... 31 2.7
AK001344-1|BAA91638.1| 406|Homo sapiens protein ( Homo sapiens ... 31 2.7
AF275678-1|AAG24388.1| 418|Homo sapiens PP239 protein protein. 31 2.7
AF217197-1|AAF27522.2| 542|Homo sapiens FBP-interacting repress... 31 2.7
AF190744-1|AAF05605.1| 556|Homo sapiens poly-U binding splicing... 31 2.7
AF114818-1|AAF23589.1| 559|Homo sapiens Ro ribonucleoprotein-bi... 31 2.7
M60858-1|AAA59954.1| 707|Homo sapiens nucleolin protein. 31 4.7
BC006516-1|AAH06516.3| 482|Homo sapiens NCL protein protein. 31 4.7
BC006494-1|AAH06494.3| 482|Homo sapiens NCL protein protein. 31 4.7
BC002343-1|AAH02343.3| 482|Homo sapiens NCL protein protein. 31 4.7
AK127608-1|BAC87055.1| 603|Homo sapiens protein ( Homo sapiens ... 31 4.7
AK126100-1|BAC86439.1| 1197|Homo sapiens protein ( Homo sapiens ... 31 4.7
AC017104-2|AAY24247.1| 710|Homo sapiens unknown protein. 31 4.7
L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein prot... 30 8.3
BC106938-1|AAI06939.1| 576|Homo sapiens zinc finger protein 791... 30 8.3
BC106937-1|AAI06938.1| 576|Homo sapiens zinc finger protein 791... 30 8.3
BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b, sub... 30 8.3
BC068242-1|AAH68242.1| 269|Homo sapiens LOC728773 protein protein. 30 8.3
BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b, sub... 30 8.3
BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b, sub... 30 8.3
AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b, sub... 30 8.3
AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b, sub... 30 8.3
AK091742-1|BAC03738.1| 687|Homo sapiens protein ( Homo sapiens ... 30 8.3
AK074877-1|BAC11261.1| 576|Homo sapiens essor-4. protein. 30 8.3
>U78525-1|AAC99479.1| 814|Homo sapiens eukaryotic translation
initiation factor protein.
Length = 814
Score = 111 bits (267), Expect = 2e-24
Identities = 52/85 (61%), Positives = 64/85 (75%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHT 433
+L++VI+KIFSKFGKI N++YP D G T GYIFLEY++P +A +AVK + KLDKQHT
Sbjct: 202 KLKNVIHKIFSKFGKITNDFYPEED-GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 260
Query: 434 FLVNLFTDFQKYSDIPKEWEPPAPQ 508
F VNLFTDF KY I EW+ P Q
Sbjct: 261 FRVNLFTDFDKYMTISDEWDIPEKQ 285
Score = 39.5 bits (88), Expect = 0.010
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +1
Query: 154 LLADILEQKPKESDGYENVVVVDACPQSAPSVL 252
LL D+L+ +P+E+DG ++V+VVD PQ P L
Sbjct: 168 LLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRL 200
>U62583-1|AAB42010.1| 873|Homo sapiens Prt1 homolog protein.
Length = 873
Score = 111 bits (267), Expect = 2e-24
Identities = 52/85 (61%), Positives = 64/85 (75%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHT 433
+L++VI+KIFSKFGKI N++YP D G T GYIFLEY++P +A +AVK + KLDKQHT
Sbjct: 202 KLKNVIHKIFSKFGKITNDFYPEED-GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 260
Query: 434 FLVNLFTDFQKYSDIPKEWEPPAPQ 508
F VNLFTDF KY I EW+ P Q
Sbjct: 261 FRVNLFTDFDKYMTISDEWDIPEKQ 285
Score = 39.5 bits (88), Expect = 0.010
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +1
Query: 154 LLADILEQKPKESDGYENVVVVDACPQSAPSVL 252
LL D+L+ +P+E+DG ++V+VVD PQ P L
Sbjct: 168 LLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRL 200
>BC110865-1|AAI10866.1| 814|Homo sapiens eukaryotic translation
initiation factor 3, subunit B protein.
Length = 814
Score = 111 bits (267), Expect = 2e-24
Identities = 52/85 (61%), Positives = 64/85 (75%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHT 433
+L++VI+KIFSKFGKI N++YP D G T GYIFLEY++P +A +AVK + KLDKQHT
Sbjct: 202 KLKNVIHKIFSKFGKITNDFYPEED-GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 260
Query: 434 FLVNLFTDFQKYSDIPKEWEPPAPQ 508
F VNLFTDF KY I EW+ P Q
Sbjct: 261 FRVNLFTDFDKYMTISDEWDIPEKQ 285
Score = 39.5 bits (88), Expect = 0.010
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +1
Query: 154 LLADILEQKPKESDGYENVVVVDACPQSAPSVL 252
LL D+L+ +P+E+DG ++V+VVD PQ P L
Sbjct: 168 LLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRL 200
>BC009986-1|AAH09986.1| 622|Homo sapiens Unknown (protein for
IMAGE:4124553) protein.
Length = 622
Score = 111 bits (267), Expect = 2e-24
Identities = 52/85 (61%), Positives = 64/85 (75%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHT 433
+L++VI+KIFSKFGKI N++YP D G T GYIFLEY++P +A +AVK + KLDKQHT
Sbjct: 11 KLKNVIHKIFSKFGKITNDFYPEED-GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 69
Query: 434 FLVNLFTDFQKYSDIPKEWEPPAPQ 508
F VNLFTDF KY I EW+ P Q
Sbjct: 70 FRVNLFTDFDKYMTISDEWDIPEKQ 94
>BC001173-1|AAH01173.1| 814|Homo sapiens EIF3S9 protein protein.
Length = 814
Score = 111 bits (267), Expect = 2e-24
Identities = 52/85 (61%), Positives = 64/85 (75%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHT 433
+L++VI+KIFSKFGKI N++YP D G T GYIFLEY++P +A +AVK + KLDKQHT
Sbjct: 202 KLKNVIHKIFSKFGKITNDFYPEED-GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 260
Query: 434 FLVNLFTDFQKYSDIPKEWEPPAPQ 508
F VNLFTDF KY I EW+ P Q
Sbjct: 261 FRVNLFTDFDKYMTISDEWDIPEKQ 285
Score = 39.5 bits (88), Expect = 0.010
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +1
Query: 154 LLADILEQKPKESDGYENVVVVDACPQSAPSVL 252
LL D+L+ +P+E+DG ++V+VVD PQ P L
Sbjct: 168 LLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRL 200
>AC004971-1|AAP21880.1| 385|Homo sapiens unknown protein.
Length = 385
Score = 111 bits (267), Expect = 2e-24
Identities = 52/85 (61%), Positives = 64/85 (75%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHT 433
+L++VI+KIFSKFGKI N++YP D G T GYIFLEY++P +A +AVK + KLDKQHT
Sbjct: 202 KLKNVIHKIFSKFGKITNDFYPEED-GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 260
Query: 434 FLVNLFTDFQKYSDIPKEWEPPAPQ 508
F VNLFTDF KY I EW+ P Q
Sbjct: 261 FRVNLFTDFDKYMTISDEWDIPEKQ 285
Score = 39.5 bits (88), Expect = 0.010
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +1
Query: 154 LLADILEQKPKESDGYENVVVVDACPQSAPSVL 252
LL D+L+ +P+E+DG ++V+VVD PQ P L
Sbjct: 168 LLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRL 200
>U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding
protein protein.
Length = 644
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/75 (21%), Positives = 41/75 (54%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 448
+ ++FS+FGK ++ NG + G+ F+ Y ++A +AV+ N ++ + F+
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Query: 449 FTDFQKYSDIPKEWE 493
++ +++ +++E
Sbjct: 267 QKKVERQAELKRKFE 281
>U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding
protein protein.
Length = 644
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/75 (21%), Positives = 41/75 (54%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 448
+ ++FS+FGK ++ NG + G+ F+ Y ++A +AV+ N ++ + F+
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Query: 449 FTDFQKYSDIPKEWE 493
++ +++ +++E
Sbjct: 267 QKKVERQAELKRKFE 281
>D12799-1|BAA02244.1| 193|Homo sapiens polyadenylate binding
protein II protein.
Length = 193
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/75 (21%), Positives = 41/75 (54%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 448
+ ++FS+FGK ++ NG + G+ F+ Y ++A +AV+ N ++ + F+
Sbjct: 18 LKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 77
Query: 449 FTDFQKYSDIPKEWE 493
++ +++ +++E
Sbjct: 78 QKKVERQAELKRKFE 92
>BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/75 (21%), Positives = 41/75 (54%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 448
+ ++FS+FGK ++ NG + G+ F+ Y ++A +AV+ N ++ + F+
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Query: 449 FTDFQKYSDIPKEWE 493
++ +++ +++E
Sbjct: 267 QKKVERQAELKRKFE 281
>BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/75 (21%), Positives = 41/75 (54%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 448
+ ++FS+FGK ++ NG + G+ F+ Y ++A +AV+ N ++ + F+
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Query: 449 FTDFQKYSDIPKEWE 493
++ +++ +++E
Sbjct: 267 QKKVERQAELKRKFE 281
>BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein.
Length = 631
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/75 (21%), Positives = 41/75 (54%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 448
+ ++FS+FGK ++ NG + G+ F+ Y ++A +AV+ N ++ + F+
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Query: 449 FTDFQKYSDIPKEWE 493
++ +++ +++E
Sbjct: 267 QKKVERQAELKRKFE 281
>AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibletaining 6 protein.
Length = 644
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/75 (21%), Positives = 41/75 (54%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 448
+ ++FS+FGK ++ NG + G+ F+ Y ++A +AV+ N ++ + F+
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Query: 449 FTDFQKYSDIPKEWE 493
++ +++ +++E
Sbjct: 267 QKKVERQAELKRKFE 281
>AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleseudogene protein.
Length = 660
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/75 (21%), Positives = 41/75 (54%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 448
+ ++FS+FGK ++ NG + G+ F+ Y ++A +AV+ N ++ + F+
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Query: 449 FTDFQKYSDIPKEWE 493
++ +++ +++E
Sbjct: 267 QKKVERQAELKRKFE 281
>AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleeudogene protein.
Length = 615
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/75 (21%), Positives = 41/75 (54%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 448
+ ++FS+FGK ++ NG + G+ F+ Y ++A +AV+ N ++ + F+
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Query: 449 FTDFQKYSDIPKEWE 493
++ +++ +++E
Sbjct: 267 QKKVERQAELKRKFE 281
>AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblepeptide, antigen CD29 includes
protein.
Length = 644
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/75 (21%), Positives = 41/75 (54%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 448
+ ++FS+FGK ++ NG + G+ F+ Y ++A +AV+ N ++ + F+
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Query: 449 FTDFQKYSDIPKEWE 493
++ +++ +++E
Sbjct: 267 QKKVERQAELKRKFE 281
>AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducible) pseudogene protein.
Length = 660
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/75 (21%), Positives = 41/75 (54%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 448
+ ++FS+FGK ++ NG + G+ F+ Y ++A +AV+ N ++ + F+
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Query: 449 FTDFQKYSDIPKEWE 493
++ +++ +++E
Sbjct: 267 QKKVERQAELKRKFE 281
>AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblely, member 5 protein.
Length = 615
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/75 (21%), Positives = 41/75 (54%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 448
+ ++FS+FGK ++ NG + G+ F+ Y ++A +AV+ N ++ + F+
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Query: 449 FTDFQKYSDIPKEWE 493
++ +++ +++E
Sbjct: 267 QKKVERQAELKRKFE 281
>L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.29
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTT--DNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLV 442
I +IFS +GKI P L+ GY ++E+ NP A +A+K + ++D Q
Sbjct: 177 IMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 236
Query: 443 NLFTDFQKYSDIPKEWEPP 499
+ + + P+ + PP
Sbjct: 237 AVLAPWPR--PPPRRFSPP 253
>BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.29
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTT--DNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLV 442
I +IFS +GKI P L+ GY ++E+ NP A +A+K + ++D Q
Sbjct: 177 IMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 236
Query: 443 NLFTDFQKYSDIPKEWEPP 499
+ + + P+ + PP
Sbjct: 237 AVLAPWPR--PPPRRFSPP 253
>BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.29
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTT--DNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLV 442
I +IFS +GKI P L+ GY ++E+ NP A +A+K + ++D Q
Sbjct: 177 IMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 236
Query: 443 NLFTDFQKYSDIPKEWEPP 499
+ + + P+ + PP
Sbjct: 237 AVLAPWPR--PPPRRFSPP 253
>BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.29
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTT--DNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLV 442
I +IFS +GKI P L+ GY ++E+ NP A +A+K + ++D Q
Sbjct: 177 IMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 236
Query: 443 NLFTDFQKYSDIPKEWEPP 499
+ + + P+ + PP
Sbjct: 237 AVLAPWPR--PPPRRFSPP 253
>AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor
RNPS1 protein.
Length = 282
Score = 34.7 bits (76), Expect = 0.29
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTT--DNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLV 442
I +IFS +GKI P L+ GY ++E+ NP A +A+K + ++D Q
Sbjct: 154 IMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 213
Query: 443 NLFTDFQKYSDIPKEWEPP 499
+ + + P+ + PP
Sbjct: 214 AVLAPWPR--PPPRRFSPP 230
>AF247662-1|AAF72519.1| 228|Homo sapiens SR-related protein LD2
protein.
Length = 228
Score = 34.7 bits (76), Expect = 0.29
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTT--DNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLV 442
I +IFS +GKI P L+ GY ++E+ NP A +A+K + ++D Q
Sbjct: 100 IMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 159
Query: 443 NLFTDFQKYSDIPKEWEPP 499
+ + + P+ + PP
Sbjct: 160 AVLAPWPR--PPPRRFSPP 176
>AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.29
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTT--DNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLV 442
I +IFS +GKI P L+ GY ++E+ NP A +A+K + ++D Q
Sbjct: 177 IMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 236
Query: 443 NLFTDFQKYSDIPKEWEPP 499
+ + + P+ + PP
Sbjct: 237 AVLAPWPR--PPPRRFSPP 253
>U38175-1|AAB41913.1| 326|Homo sapiens HuR RNA binding protein
protein.
Length = 326
Score = 32.3 bits (70), Expect = 1.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCK 415
Q + +FS+FG+I+N GL+ G F+ + A EA+ + N K
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
>BT009793-1|AAP88795.1| 326|Homo sapiens ELAV (embryonic lethal,
abnormal vision, Drosophila)-like 1 (Hu antigen R)
protein.
Length = 326
Score = 32.3 bits (70), Expect = 1.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCK 415
Q + +FS+FG+I+N GL+ G F+ + A EA+ + N K
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
>BC003376-1|AAH03376.1| 326|Homo sapiens ELAV (embryonic lethal,
abnormal vision, Drosophila)-like 1 (Hu antigen R)
protein.
Length = 326
Score = 32.3 bits (70), Expect = 1.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCK 415
Q + +FS+FG+I+N GL+ G F+ + A EA+ + N K
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
>BC130519-1|AAI30520.1| 594|Homo sapiens apobec-1 complementation
factor protein.
Length = 594
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 287 KFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
K GKI NG GY F+ +SN A A+K NN ++
Sbjct: 78 KIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEI 121
>BC054873-1|AAH54873.1| 122|Homo sapiens ACF protein protein.
Length = 122
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 287 KFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
K GKI NG GY F+ +SN A A+K NN ++
Sbjct: 78 KIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEI 121
>AL589794-7|CAI15763.1| 586|Homo sapiens APOBEC1 complementation
factor protein.
Length = 586
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 287 KFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
K GKI NG GY F+ +SN A A+K NN ++
Sbjct: 78 KIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEI 121
>AL589794-6|CAI15764.1| 594|Homo sapiens APOBEC1 complementation
factor protein.
Length = 594
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 287 KFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
K GKI NG GY F+ +SN A A+K NN ++
Sbjct: 78 KIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEI 121
>AL589794-5|CAI15762.1| 594|Homo sapiens APOBEC1 complementation
factor protein.
Length = 594
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 287 KFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
K GKI NG GY F+ +SN A A+K NN ++
Sbjct: 86 KIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEI 129
>AL512366-4|CAI14236.1| 586|Homo sapiens APOBEC1 complementation
factor protein.
Length = 586
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 287 KFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
K GKI NG GY F+ +SN A A+K NN ++
Sbjct: 78 KIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEI 121
>AL512366-3|CAI14235.1| 594|Homo sapiens APOBEC1 complementation
factor protein.
Length = 594
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 287 KFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
K GKI NG GY F+ +SN A A+K NN ++
Sbjct: 78 KIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEI 121
>AL512366-2|CAI14234.1| 201|Homo sapiens APOBEC1 complementation
factor protein.
Length = 201
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 287 KFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
K GKI NG GY F+ +SN A A+K NN ++
Sbjct: 78 KIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEI 121
>AL512366-1|CAI14233.1| 594|Homo sapiens APOBEC1 complementation
factor protein.
Length = 594
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 287 KFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
K GKI NG GY F+ +SN A A+K NN ++
Sbjct: 86 KIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEI 129
>AJ272079-1|CAB94755.1| 586|Homo sapiens APOBEC-1 stimulating
protein protein.
Length = 586
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 287 KFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
K GKI NG GY F+ +SN A A+K NN ++
Sbjct: 78 KIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEI 121
>AJ272078-1|CAB94754.1| 594|Homo sapiens APOBEC-1 stimulating
protein protein.
Length = 594
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 287 KFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
K GKI NG GY F+ +SN A A+K NN ++
Sbjct: 78 KIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEI 121
>AF271790-1|AAF76222.1| 569|Homo sapiens APOBEC-1 complementation
factor related protein protein.
Length = 569
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 287 KFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
K GKI NG GY F+ +SN A A+K NN ++
Sbjct: 61 KIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEI 104
>AF271789-1|AAF76221.1| 586|Homo sapiens APOBEC-1 complementation
factor protein.
Length = 586
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 287 KFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
K GKI NG GY F+ +SN A A+K NN ++
Sbjct: 78 KIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEI 121
>AF209192-1|AAF34824.1| 586|Homo sapiens Apobec-1 complementation
factor protein.
Length = 586
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 287 KFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
K GKI NG GY F+ +SN A A+K NN ++
Sbjct: 78 KIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEI 121
>U51586-1|AAB41656.1| 541|Homo sapiens siah binding protein 1
protein.
Length = 541
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 269 INKIFSKFGKIVN---EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 430
I +F FGKI + PTT G GY F+EY Q++ +AV + N L Q+
Sbjct: 224 IKSVFEAFGKIKSCTLARDPTT--GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 278
>CR457143-1|CAG33424.1| 559|Homo sapiens SIAHBP1 protein.
Length = 559
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 269 INKIFSKFGKIVN---EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 430
I +F FGKI + PTT G GY F+EY Q++ +AV + N L Q+
Sbjct: 242 IKSVFEAFGKIKSCTLARDPTT--GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 296
>BC024208-1|AAH24208.1| 423|Homo sapiens RNA binding motif protein
23 protein.
Length = 423
Score = 31.5 bits (68), Expect = 2.7
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
+ ++ IF FGKI N +D G + GY F+ +S+ + A A++ N +L
Sbjct: 260 EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 313
>BC011979-1|AAH11979.1| 516|Homo sapiens SIAHBP1 protein protein.
Length = 516
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 269 INKIFSKFGKIVN---EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 430
I +F FGKI + PTT G GY F+EY Q++ +AV + N L Q+
Sbjct: 199 IKSVFEAFGKIKSCTLARDPTT--GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 253
>BC011265-1|AAH11265.1| 516|Homo sapiens SIAHBP1 protein protein.
Length = 516
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 269 INKIFSKFGKIVN---EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 430
I +F FGKI + PTT G GY F+EY Q++ +AV + N L Q+
Sbjct: 199 IKSVFEAFGKIKSCTLARDPTT--GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 253
>BC009734-1|AAH09734.1| 499|Homo sapiens SIAHBP1 protein protein.
Length = 499
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 269 INKIFSKFGKIVN---EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 430
I +F FGKI + PTT G GY F+EY Q++ +AV + N L Q+
Sbjct: 182 IKSVFEAFGKIKSCTLARDPTT--GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 236
>BC008875-1|AAH08875.1| 542|Homo sapiens fuse-binding
protein-interacting repressor protein.
Length = 542
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 269 INKIFSKFGKIVN---EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 430
I +F FGKI + PTT G GY F+EY Q++ +AV + N L Q+
Sbjct: 225 IKSVFEAFGKIKSCTLARDPTT--GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 279
>BC002566-1|AAH02566.1| 424|Homo sapiens RNA binding motif protein
23 protein.
Length = 424
Score = 31.5 bits (68), Expect = 2.7
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
+ ++ IF FGKI N +D G + GY F+ +S+ + A A++ N +L
Sbjct: 260 EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 313
>AK001344-1|BAA91638.1| 406|Homo sapiens protein ( Homo sapiens
cDNA FLJ10482 fis, clone NT2RP2000153, weakly similar to
GAR2 PROTEIN. ).
Length = 406
Score = 31.5 bits (68), Expect = 2.7
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
+ ++ IF FGKI N +D G + GY F+ +S+ + A A++ N +L
Sbjct: 242 EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 295
>AF275678-1|AAG24388.1| 418|Homo sapiens PP239 protein protein.
Length = 418
Score = 31.5 bits (68), Expect = 2.7
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
+ ++ IF FGKI N +D G + GY F+ +S+ + A A++ N +L
Sbjct: 254 EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 307
>AF217197-1|AAF27522.2| 542|Homo sapiens FBP-interacting repressor
protein.
Length = 542
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 269 INKIFSKFGKIVN---EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 430
I +F FGKI + PTT G GY F+EY Q++ +AV + N L Q+
Sbjct: 225 IKSVFEAFGKIKSCTLARDPTT--GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 279
>AF190744-1|AAF05605.1| 556|Homo sapiens poly-U binding splicing
factor PUF60 protein.
Length = 556
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 269 INKIFSKFGKIVN---EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 430
I +F FGKI + PTT G GY F+EY Q++ +AV + N L Q+
Sbjct: 239 IKSVFEAFGKIKSCTLARDPTT--GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 293
>AF114818-1|AAF23589.1| 559|Homo sapiens Ro
ribonucleoprotein-binding protein 1 protein.
Length = 559
Score = 31.5 bits (68), Expect = 2.7
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 269 INKIFSKFGKIVN---EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 430
I +F FGKI + PTT G GY F+EY Q++ +AV + N L Q+
Sbjct: 242 IKSVFEAFGKIKSCTLARDPTT--GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 296
>M60858-1|AAA59954.1| 707|Homo sapiens nucleolin protein.
Length = 707
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 317 PTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
P NG + GY F+E+++ ++A EA+ + N +++
Sbjct: 515 PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 549
>BC006516-1|AAH06516.3| 482|Homo sapiens NCL protein protein.
Length = 482
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 317 PTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
P NG + GY F+E+++ ++A EA+ + N +++
Sbjct: 287 PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 321
>BC006494-1|AAH06494.3| 482|Homo sapiens NCL protein protein.
Length = 482
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 317 PTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
P NG + GY F+E+++ ++A EA+ + N +++
Sbjct: 287 PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 321
>BC002343-1|AAH02343.3| 482|Homo sapiens NCL protein protein.
Length = 482
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 317 PTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
P NG + GY F+E+++ ++A EA+ + N +++
Sbjct: 287 PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 321
>AK127608-1|BAC87055.1| 603|Homo sapiens protein ( Homo sapiens
cDNA FLJ45706 fis, clone FEBRA2028457, highly similar
to Nucleolin. ).
Length = 603
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 317 PTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
P NG + GY F+E+++ ++A EA+ + N +++
Sbjct: 408 PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 442
>AK126100-1|BAC86439.1| 1197|Homo sapiens protein ( Homo sapiens
cDNA FLJ44112 fis, clone TESTI4046282. ).
Length = 1197
Score = 30.7 bits (66), Expect = 4.7
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = -3
Query: 384 AAFCGLLYSRKMYPVVSPLSVVG*YSLTILPNLLNILFITLCSSQDARGRLRTRVYDYNV 205
A C ++ S +Y ++ L V +L +LP L + QD L R+ V
Sbjct: 489 ADICSVIAS--LYYIIRELHFVR-QNLIVLPLLALYQYFVSGICQDITRNLEARILKIEV 545
Query: 204 FITVRFLRLLF*DIRQ*FFFRNL 136
I +RF F +I Q F+ +N+
Sbjct: 546 LIDLRFFSEAFYEISQIFYGKNM 568
>AC017104-2|AAY24247.1| 710|Homo sapiens unknown protein.
Length = 710
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 317 PTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
P NG + GY F+E+++ ++A EA+ + N +++
Sbjct: 515 PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 549
>L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein
protein.
Length = 424
Score = 29.9 bits (64), Expect = 8.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 275 KIFSKFGKIVNEYYPTTD-NGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
++F + G +VN + P G GY F+E+ + ++A A+K N KL
Sbjct: 31 ELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKL 79
>BC106938-1|AAI06939.1| 576|Homo sapiens zinc finger protein 791
protein.
Length = 576
Score = 29.9 bits (64), Expect = 8.3
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 638 FRVKEFCHTWEKPTPVPKC-QTRNWFIGIRIH 546
FR+ E HT EKP KC +T N+ + ++IH
Sbjct: 371 FRIHERTHTGEKPYECKKCGKTFNYPLDLKIH 402
>BC106937-1|AAI06938.1| 576|Homo sapiens zinc finger protein 791
protein.
Length = 576
Score = 29.9 bits (64), Expect = 8.3
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 638 FRVKEFCHTWEKPTPVPKC-QTRNWFIGIRIH 546
FR+ E HT EKP KC +T N+ + ++IH
Sbjct: 371 FRIHERTHTGEKPYECKKCGKTFNYPLDLKIH 402
>BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 29.9 bits (64), Expect = 8.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 275 KIFSKFGKIVNEYYPTTD-NGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
++F + G +VN + P G GY F+E+ + ++A A+K N KL
Sbjct: 31 ELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKL 79
>BC068242-1|AAH68242.1| 269|Homo sapiens LOC728773 protein protein.
Length = 269
Score = 29.9 bits (64), Expect = 8.3
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
+ K FS FG I+N + G + + F+ +S+P+ A+AV A N
Sbjct: 130 LQKEFSPFG-IINSANVMMEGGCSKRFGFVCFSSPEEVAKAVTAMN 174
>BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 29.9 bits (64), Expect = 8.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 275 KIFSKFGKIVNEYYPTTD-NGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
++F + G +VN + P G GY F+E+ + ++A A+K N KL
Sbjct: 31 ELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKL 79
>BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 29.9 bits (64), Expect = 8.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 275 KIFSKFGKIVNEYYPTTD-NGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
++F + G +VN + P G GY F+E+ + ++A A+K N KL
Sbjct: 31 ELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKL 79
>AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 29.9 bits (64), Expect = 8.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 275 KIFSKFGKIVNEYYPTTD-NGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
++F + G +VN + P G GY F+E+ + ++A A+K N KL
Sbjct: 31 ELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKL 79
>AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 29.9 bits (64), Expect = 8.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 275 KIFSKFGKIVNEYYPTTD-NGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
++F + G +VN + P G GY F+E+ + ++A A+K N KL
Sbjct: 31 ELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKL 79
>AK091742-1|BAC03738.1| 687|Homo sapiens protein ( Homo sapiens
cDNA FLJ34423 fis, clone HHDPC2008123, highly similar to
NUCLEOLIN. ).
Length = 687
Score = 29.9 bits (64), Expect = 8.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 317 PTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
P NG + GY F+E+++ ++A EA+ + N
Sbjct: 492 PQNQNGKSKGYAFIEFASFEDAKEALNSCN 521
>AK074877-1|BAC11261.1| 576|Homo sapiens essor-4. protein.
Length = 576
Score = 29.9 bits (64), Expect = 8.3
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 638 FRVKEFCHTWEKPTPVPKC-QTRNWFIGIRIH 546
FR+ E HT EKP KC +T N+ + ++IH
Sbjct: 371 FRIHERTHTGEKPYECKKCGKTFNYPLDLKIH 402
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,407,289
Number of Sequences: 237096
Number of extensions: 2199767
Number of successful extensions: 5510
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 5048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5491
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -