Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30116
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical... 54 7e-08
AL032646-11|CAE46682.1| 193|Caenorhabditis elegans Hypothetical... 54 1e-07
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 33 0.13
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 31 0.54
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 31 0.71
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 30 1.2
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 29 2.2
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 29 2.2
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 29 2.2
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 29 3.8
AC084158-29|AAL27264.2| 666|Caenorhabditis elegans Yeast smf (d... 29 3.8
Z83234-2|CAB70170.2| 715|Caenorhabditis elegans Hypothetical pr... 28 5.0
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 28 6.7
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 28 6.7
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 28 6.7
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 28 6.7
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 28 6.7
AC006808-4|AAF60815.3| 397|Caenorhabditis elegans Hypothetical ... 28 6.7
AC006808-3|AAT68889.1| 433|Caenorhabditis elegans Hypothetical ... 28 6.7
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 27 8.8
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 27 8.8
>AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical
protein Y54E2A.11a protein.
Length = 725
Score = 54.4 bits (125), Expect = 7e-08
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHT 433
+LQSV+ K+ + V Y P + G G + E+++ ++A AVK+ N DK HT
Sbjct: 63 KLQSVLKKVLERLDPAVKLYIPPSPEGGCLGVLLTEWADQRSAQFAVKSLNGYAFDKNHT 122
Query: 434 FLVNLFTDFQKYSDIPKEWEPPAPQ-HSRCSQILQWVFN 547
F F D ++ W P Q ++ + W+ N
Sbjct: 123 FTARSFKDMKQLEAPSDHWTTPEKQAYNDVGDLWWWLQN 161
>AL032646-11|CAE46682.1| 193|Caenorhabditis elegans Hypothetical
protein Y54E2A.11b protein.
Length = 193
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/85 (30%), Positives = 40/85 (47%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHT 433
+LQSV+ K+ + V Y P + G G + E+++ ++A AVK+ N DK HT
Sbjct: 63 KLQSVLKKVLERLDPAVKLYIPPSPEGGCLGVLLTEWADQRSAQFAVKSLNGYAFDKNHT 122
Query: 434 FLVNLFTDFQKYSDIPKEWEPPAPQ 508
F F D ++ W P Q
Sbjct: 123 FTARSFKDMKQLEAPSDHWTTPEKQ 147
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
Q ++ +FSKFG+I + T G G+ F+ +++ A +AV+ N+ L+
Sbjct: 251 QEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILE 304
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 281 FSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
FS FG I++ T D G + GY F+ + +A A++ N L + ++
Sbjct: 165 FSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 281 FSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNN 409
FS FG I + +NG + G+ F+ + P+ A AV N+
Sbjct: 363 FSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNS 405
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
Q ++ +FSKFG+I + T G G+ F+ +++ A +AV+ N+ L+
Sbjct: 251 QEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILE 304
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 281 FSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
FS FG I++ T D G + GY F+ + +A A++ N L + ++
Sbjct: 165 FSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 281 FSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNN 409
FS FG I + +NG + G+ F+ + P+ A AV N+
Sbjct: 363 FSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNS 405
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 257 LQSVINKIFSKFGKIVNEYYPTT--DNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
L++ + +IFS +G I N P N + GY ++EY N ++A +++K + ++D
Sbjct: 145 LKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQID 201
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
+S + + F +GKI + G GY F+EYS+ A K + K+D
Sbjct: 117 ESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKADGIKVD 170
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
+ I IFSK G +++ + + G GY F+E+ + Q A A++ N +L
Sbjct: 31 EDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGYEL 84
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 281 FSKFGKIVNEYYPTTDN-GLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
FS++GKI N + G GY +EY + A EA+ +N+ L
Sbjct: 75 FSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDL 121
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 281 FSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
FS FG I++ ++G + GY F+ + + A A++ N L + F+
Sbjct: 140 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 281 FSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
FS FG I++ ++G + GY F+ + + A A++ N L + F+
Sbjct: 77 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 129
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 281 FSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
FS FG I++ ++G + GY F+ + + A A++ N L + F+
Sbjct: 140 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 278 IFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 448
+F K GKI + +G + GY F+ Y N ++AA A K + ++ VN+
Sbjct: 219 LFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVNV 276
>AC084158-29|AAL27264.2| 666|Caenorhabditis elegans Yeast smf
(divalent cation transporter)homolog protein 3 protein.
Length = 666
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -3
Query: 120 VVKIRFFFKVLFLIVTLRSWIRFF--IAFFLS 31
++KIRFFFK+ F T+ I F + FF+S
Sbjct: 42 ILKIRFFFKIFFADKTMNFLIFIFDALTFFIS 73
>Z83234-2|CAB70170.2| 715|Caenorhabditis elegans Hypothetical
protein K09E4.4 protein.
Length = 715
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 279 ILFITLCSSQDARGRLRTRVYDYN 208
+L + LC ++ ARG LR ++ DY+
Sbjct: 9 LLILVLCGAERARGALRVQLQDYD 32
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL-DKQ 427
+ ++ FG + G + GY F EY +P +A+ N +L DKQ
Sbjct: 307 VKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQ 360
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical
protein ZK783.1 protein.
Length = 2585
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = -2
Query: 637 SG*RNSATPGRSQHQSPNAKQGTGS*ASGS 548
SG ++ AT G S S +AK GTGS ASGS
Sbjct: 812 SGKKSEATSGSS---SSSAKSGTGSEASGS 838
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL-DKQ 427
+ ++ FG + G + GY F EY +P +A+ N +L DKQ
Sbjct: 307 VKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQ 360
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL-DKQ 427
+ ++ FG + G + GY F EY +P +A+ N +L DKQ
Sbjct: 282 VKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQ 335
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL-DKQ 427
+ ++ FG + G + GY F EY +P +A+ N +L DKQ
Sbjct: 285 VKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQ 338
>AC006808-4|AAF60815.3| 397|Caenorhabditis elegans Hypothetical
protein Y58G8A.4a protein.
Length = 397
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -2
Query: 415 FTVVRRFHGFGGILWVTVFQENVPSRESIVSRGVVFVDYFTEFT 284
F V G GG+LW + + S ++ ++F D FT
Sbjct: 64 FLFVLGIFGNGGVLWAVARNKRLQSARNVFLLNLIFTDLILVFT 107
>AC006808-3|AAT68889.1| 433|Caenorhabditis elegans Hypothetical
protein Y58G8A.4b protein.
Length = 433
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -2
Query: 415 FTVVRRFHGFGGILWVTVFQENVPSRESIVSRGVVFVDYFTEFT 284
F V G GG+LW + + S ++ ++F D FT
Sbjct: 64 FLFVLGIFGNGGVLWAVARNKRLQSARNVFLLNLIFTDLILVFT 107
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 266 VINKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQ 427
++ F+KFG++ + + GY F+ + N QNA A+ N + K+
Sbjct: 150 LLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKR 204
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLT-TGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVN 445
+ +F FG+IV G G+ +LE++N + +EA+ N L Q +L N
Sbjct: 223 LKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQ--YLRN 280
Query: 446 LFTDFQKY 469
FT F Y
Sbjct: 281 -FTTFGLY 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,142,117
Number of Sequences: 27780
Number of extensions: 331280
Number of successful extensions: 923
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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