Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30116
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   3.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.9  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 626 EFCHTWEKPTPVPKCQTR 573
           E  HT EKP   P+C  R
Sbjct: 1   ERTHTGEKPFECPECHKR 18


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 434 FLVNLFTDFQKYSDIPKEWEPPAPQHSRC 520
           F V L T    Y     EW+PPA   S C
Sbjct: 125 FEVTLATKATIYHQGLVEWKPPAIYKSSC 153


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 126 LWVVKI-RFFFKVLFLIVTLRSWIRF 52
           +++ K+ RFFF   FLI+ +  W  F
Sbjct: 357 IYIDKVSRFFFPFSFLILNVVYWSTF 382


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 440 VNLFTDFQKYSDIPKEWEPPAPQHSRCS 523
           V L T    Y      W+PPA   S CS
Sbjct: 127 VTLMTKATVYYSGLVVWQPPAVYKSSCS 154


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = +2

Query: 140 FLKKNYWRIS*NRSLRNLTVMKTL*S*TRV---RSRPRAS*ELQSVINKIFSKFGKIVNE 310
           F + +  RI  + SL++ T+  ++ +   +   R   R +  + S +N   +K  K  ++
Sbjct: 249 FSRSSTSRIVISESLKHFTIQSSVTTSKMMVSPRLYDRQNGLVLSRMNLTLAKMEK-TSK 307

Query: 311 YYPTTDNGLTTGYIFLEYSNPQNAAE 388
             P  DN  +TG +   Y+NP +  E
Sbjct: 308 PLPMVDNPESTGNLVYIYNNPFSDVE 333


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 592 TGVGFSQVWQNSFTLK 639
           T +GF   WQNS +L+
Sbjct: 7   TALGFLLFWQNSASLE 22


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 485 EWEPPAPQHSRCS-QILQWVFNGS*CL*TSSLFGIW 589
           EW+PPA   S C   +  + F+   C+     FG W
Sbjct: 138 EWKPPAIYKSSCEIDVEYFPFDEQTCV---MKFGSW 170


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 329 NGLTTGYIFLEYSNPQNAAEAVKA 400
           N L   Y F +YSN   A E++ A
Sbjct: 23  NVLDFDYYFYDYSNRTQALESIIA 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,444
Number of Sequences: 438
Number of extensions: 4136
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)