Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30115
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 153 2e-38
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 81 1e-16
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 68 1e-12
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 64 2e-11
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 56 5e-09
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 43 5e-05
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 32 0.070
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 29 0.65
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 29 0.86
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 28 1.1
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 28 1.5
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 28 1.5
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 28 1.5
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 27 2.6
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 3.5
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 3.5
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 26 4.6
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 26 6.0
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 6.0
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 6.0
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 8.0
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 8.0
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.0
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 8.0
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 153 bits (371), Expect = 2e-38
Identities = 70/85 (82%), Positives = 79/85 (92%)
Frame = +1
Query: 1 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVESDGNGTIDFPEFLTM 180
F+EAFSLFD+D DG IT+ ELG VMRSLGQ+PT AELQDMINEV++DGNGTIDF EFLTM
Sbjct: 14 FREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTM 73
Query: 181 MARKMKDTDSEEEIREAFRVFDKDG 255
MARKMKDTD+EEE+REAF+VFDKDG
Sbjct: 74 MARKMKDTDNEEEVREAFKVFDKDG 98
Score = 69.3 bits (162), Expect = 5e-13
Identities = 30/50 (60%), Positives = 41/50 (82%)
Frame = +3
Query: 261 FISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 410
+I+ EL HV+T+LGE+L+ EEV +MIREAD DGDG +NYEEF +++SK
Sbjct: 101 YITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVISSK 150
Score = 66.9 bits (156), Expect = 3e-12
Identities = 29/63 (46%), Positives = 46/63 (73%)
Frame = +1
Query: 4 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVESDGNGTIDFPEFLTMM 183
+EAF +FDKDG+G IT +EL V+ SLG+ ++ E+ DMI E ++DG+G I++ EF ++
Sbjct: 88 REAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVI 147
Query: 184 ARK 192
+ K
Sbjct: 148 SSK 150
Score = 48.4 bits (110), Expect = 1e-06
Identities = 22/49 (44%), Positives = 33/49 (67%)
Frame = +3
Query: 264 ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 410
I++ EL VM +LG+ T E+ +MI E D DG+G +++ EF+TMM K
Sbjct: 29 ITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARK 77
Score = 30.3 bits (65), Expect = 0.28
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 291 MTNLGEKLTDEEVDEMIREA----DIDGDGQVNYEEFVTMMTS 407
+T + K+ D + +E +REA D DG+G + EE ++TS
Sbjct: 71 LTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTS 113
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 81.4 bits (192), Expect = 1e-16
Identities = 41/85 (48%), Positives = 59/85 (69%)
Frame = +1
Query: 4 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVESDGNGTIDFPEFLTMM 183
KEAF L+D D DG I T +G+V+RSLG N T+AEL + NE+ ID +F++ +
Sbjct: 12 KEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL----GDAIDEKKFMSFV 67
Query: 184 ARKMKDTDSEEEIREAFRVFDKDGT 258
+ K+++T+SEEE +AFRVFDKD +
Sbjct: 68 SNKLRETESEEEYIKAFRVFDKDNS 92
Score = 47.2 bits (107), Expect = 2e-06
Identities = 20/62 (32%), Positives = 37/62 (59%)
Frame = +1
Query: 7 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVESDGNGTIDFPEFLTMMA 186
+AF +FDKD G I T + M++LG+ ++ E+Q M+ E + +G+ D+ +F+ +
Sbjct: 82 KAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIM 141
Query: 187 RK 192
K
Sbjct: 142 AK 143
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +3
Query: 261 FISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 410
+I A+ M LGEKL+D EV M++EAD G +Y +FV + +K
Sbjct: 94 YIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIMAK 143
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 68.1 bits (159), Expect = 1e-12
Identities = 32/84 (38%), Positives = 48/84 (57%)
Frame = +1
Query: 7 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVESDGNGTIDFPEFLTMMA 186
EAF LFD D D I EL MR+LG N ++E+ ++ + + G G + +F+ +M
Sbjct: 41 EAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRVMT 100
Query: 187 RKMKDTDSEEEIREAFRVFDKDGT 258
K+ + D EEI+ AF +FD D T
Sbjct: 101 EKIVERDPLEEIKRAFELFDDDET 124
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +3
Query: 264 ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 401
IS LR V L E + D+E++ MI E D+D DG++N +EF+ +M
Sbjct: 127 ISLRNLRRVAKELNENIDDQELEAMIEEFDLDQDGEINEQEFIAIM 172
Score = 34.7 bits (76), Expect = 0.013
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +3
Query: 276 ELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 410
ELR M LG EV +++R+ D G G + E+FV +MT K
Sbjct: 58 ELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRVMTEK 102
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 64.1 bits (149), Expect = 2e-11
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVESDGNGTIDFPEFLTM 180
+K+AFSLFD+ G G I +G ++R+ GQNPT AE I E+ES +D +FL +
Sbjct: 8 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAE----ITEIESTLPAEVDMEQFLQV 63
Query: 181 MARK--MKDTDSEEEIREAFRVFDKDGT 258
+ R EE + F+VFDKD T
Sbjct: 64 LNRPNGFDMPGDPEEFVKGFQVFDKDAT 91
Score = 52.4 bits (120), Expect = 6e-08
Identities = 23/46 (50%), Positives = 35/46 (76%)
Frame = +3
Query: 264 ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 401
I ELR+V+T+LGEKL++EE+DE+++ + DG VNY +FV M+
Sbjct: 94 IGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQMI 138
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/61 (31%), Positives = 35/61 (57%)
Frame = +1
Query: 1 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVESDGNGTIDFPEFLTM 180
F + F +FDKD G I EL V+ SLG+ + E+ +++ V +G +++ +F+ M
Sbjct: 79 FVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQM 137
Query: 181 M 183
+
Sbjct: 138 I 138
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 56.0 bits (129), Expect = 5e-09
Identities = 32/89 (35%), Positives = 46/89 (51%)
Frame = +1
Query: 4 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVESDGNGTIDFPEFLTMM 183
KEAF+L DKDGDG I +++ T++ SL Q+ +E D IN + N I+ FLT M
Sbjct: 51 KEAFALLDKDGDGNIGREDVKTMLTSLNQDASE----DSINHMFESINPPINLAAFLTAM 106
Query: 184 ARKMKDTDSEEEIREAFRVFDKDGTASSP 270
+ ++ EAF FD + P
Sbjct: 107 GSMLCRISPRNDLLEAFSTFDDTQSGKIP 135
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +3
Query: 264 ISAAELRHVMTNLGEKLTDEEVDEMIREA----DIDGDGQVNYEEFVTMMTS 407
++A + + +LT ++ E+ +EA D DGDG + E+ TM+TS
Sbjct: 26 VAAQAAKRASSGAFAQLTSSQIQEL-KEAFALLDKDGDGNIGREDVKTMLTS 76
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 7 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVESDG 144
EAFS FD G I + + S+G E++ ++ S G
Sbjct: 121 EAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVESILRSYTSHG 166
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 42.7 bits (96), Expect = 5e-05
Identities = 23/83 (27%), Positives = 45/83 (54%)
Frame = +1
Query: 4 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVESDGNGTIDFPEFLTMM 183
++ F D + G+I E ++ S+ NP + L +++E DG G +DF EF+ +
Sbjct: 27 RKRFIKIDANQSGSIDRNEFLSIP-SVASNPLASRLFSVVDE---DGGGDVDFQEFINSL 82
Query: 184 ARKMKDTDSEEEIREAFRVFDKD 252
+ + EE+++ AF+++D D
Sbjct: 83 SVFSVHGNKEEKLKFAFKIYDID 105
Score = 34.3 bits (75), Expect = 0.017
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 288 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 389
V TNL E + VD+ I E D D DG++++EEF
Sbjct: 123 VGTNLREDQLQQIVDKTIMEVDKDRDGKISFEEF 156
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 32.3 bits (70), Expect = 0.070
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 4 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVESDGNGTIDFPEF 171
+EAF LFD G I ++L LG+N T+ +LQ M++ + NG + EF
Sbjct: 15 EEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDLAGT--NGKVSREEF 68
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 29.1 bits (62), Expect = 0.65
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 321 EEVDEMIREADIDGDGQVNYEEFV 392
+EV E IRE ++D G+V E+FV
Sbjct: 54 DEVREAIREVNVDSSGRVEPEDFV 77
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 28.7 bits (61), Expect = 0.86
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 115 DMINEVESDGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGTASSPR 273
D N +ESD + + D LT A M ++DSE EI + D DG S +
Sbjct: 173 DKENLLESDASSSNDSESELTDSADNMNESDSESEIESSDSDHD-DGENSDSK 224
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 309 KLTDEEVDEMIREADIDGDGQVNYEEFVTMM 401
KL+ ++++++ ADID DG +++EF M
Sbjct: 36 KLSSDKLEKIWDLADIDDDGMFDFDEFAIAM 66
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +1
Query: 118 MINEVESDGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKD 252
+ N ++D NG IDF EF+ ++ + + +++ AF+++D D
Sbjct: 68 VFNVFDADKNGYIDFKEFICALSVTSRG-ELNDKLIWAFQLYDLD 111
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 497 SNTMLILCVMKQNVYLNSLLFTHTLAGGSLRRHHGDE 387
S T+L + +M QN +LN+ F H A + R+ + +E
Sbjct: 199 SQTVLEILLMNQNSFLNNFNFEHIKADFAFRQKNYEE 235
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = +1
Query: 121 INEVESDGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGTASS 267
I+E + + NG + F + + +KD+ EE+ ++F + D+ ++S
Sbjct: 545 ISESDDESNGDMIRDSFDRLSSESIKDSQKTEELHDSFGINDEVDQSTS 593
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 288 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 386
V + E+ +EE DEM E D +G+G EE
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEE 202
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 115 LEVRLLWGSVLATSSRCPALWS*WCHR 35
LE++ WGS+ A + +W+ W R
Sbjct: 850 LEMKNYWGSISALCDKMSEIWADWVQR 876
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/85 (21%), Positives = 35/85 (41%)
Frame = +1
Query: 73 MRSLGQNPTEAELQDMINEVESDGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKD 252
+R + +L+D+ +EVE+D + E A +DT E ++ +
Sbjct: 472 IRETEEYAASPKLEDIADEVETDATSQRELLERQIQKAESSEDTSEIESLQGKLSLPQVS 531
Query: 253 GTASSPRPSCATS*PTSERNSLTRR 327
T +PS +S P + N + +
Sbjct: 532 STQQEIQPS--SSVPEAASNEIAEK 554
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 365 VAVDIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVPSLSK 240
V++ I L ++ L+ FLSE + +G+ DEA+ + K
Sbjct: 180 VSIGINLLWGIITLVGVSFLSESPRYLVSIGKDDEAIQVMCK 221
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/70 (24%), Positives = 28/70 (40%)
Frame = -3
Query: 455 YLNSLLFTHTLAGGSLRRHHGDELFVIDLAVAVDIGLANHLVDLLVSEFLSEVGHDVAQL 276
Y L T+ G + E+ I+ V DIG + + +F + D +L
Sbjct: 172 YCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPEL 231
Query: 275 GRGDEAVPSL 246
GD ++ SL
Sbjct: 232 YEGDRSLESL 241
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 377 IDLAVAVDIGLANHLVDLLVSEFLSEVGHDVAQL 276
+D++V +D+ +H L S LS HDV Q+
Sbjct: 28 VDVSVDIDVIFPDHTQTLSFSLLLSNTIHDVRQV 61
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 43 TITTKELGTVMRSLGQ-NPTEAELQDMINEVESDGNGTIDFPEFLTMMARKMKDTDSEEE 219
T + GT+ S+G + E + ++++ T DFPE L+ +++ EE
Sbjct: 545 TTSLHPFGTLYESIGTIGDPKVEYKAILHDFSCH---TYDFPESLSHCVKRLPTPIPAEE 601
Query: 220 IREAFRVFDK 249
+++ + + DK
Sbjct: 602 LQKRYNLRDK 611
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 7 EAFSLFDKDGDGTITTKELGTVMR 78
+ F FD+D DG + +EL + R
Sbjct: 311 DLFYQFDRDNDGALNNEELSALFR 334
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 13 FSLFDKDGDGTITTKELGTVMRSLG--QNPTEAELQDMINEVES-DG 144
+S+FD+D +G IT +E+ +G + A L+D+ + + DG
Sbjct: 552 YSIFDRDLNGDITCEEIELACVEIGKERKSISASLRDLNDSISKLDG 598
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 455 YLNSLLFTHTLAGGSLRRHHGDELFVIDLAVAV 357
YLNSLL H G L++ H + LAVA+
Sbjct: 299 YLNSLLSVHEKDGVLLQKFHNSYVQYQKLAVAL 331
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +1
Query: 115 DMINEVESDGNGTIDFPEFLTMMARKMKDTDSEEEIRE 228
D + ++ + T + PE + ++ K+KD + E + E
Sbjct: 479 DCLEVLQISVDDTSNIPEIIARLSEKLKDREESEAVTE 516
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,171
Number of Sequences: 5004
Number of extensions: 37098
Number of successful extensions: 143
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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