Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30115
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 498 PAFLSVCDKLNTIIVS---VRKFAQSRGRAPSHP 590
           P F ++   L+ +I S   +RK AQ+RG  P  P
Sbjct: 883 PTFANLTQTLDKLIRSPDTLRKIAQNRGTNPLAP 916


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +2

Query: 392 HHDDVEVSRRLVCV*KAENLNIHFVS*HTILA 487
           H    E     VC+   E + +HF + H  +A
Sbjct: 183 HQSGSEAEAEFVCIATPEAIELHFTTDHPSVA 214


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 329 DLLVSEFLS--EVGHDVAQLGRGD 264
           DL  S+ L   E+ HDVA  G+G+
Sbjct: 163 DLNTSQLLKQVEIPHDVATTGKGE 186


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 486 HRIGPAFLSVCD 521
           HR+ PAF S CD
Sbjct: 69  HRLYPAFSSSCD 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,515
Number of Sequences: 438
Number of extensions: 2556
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)