Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30114
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0648 - 24716249-24717841                                         29   5.0  
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506...    28   6.6  
04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285     28   8.7  

>02_04_0648 - 24716249-24717841
          Length = 530

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 120 RDGVYGHDCSRDAL--GYSRLSVQVLAREL 37
           +DG YGHD  R +L  GYSR  +   AR+L
Sbjct: 142 KDGFYGHDFIRTSLLDGYSRYGMMGDARKL 171


>04_04_0964 -
           29749624-29749649,29749742-29749945,29750036-29750634,
           29750742-29750826,29750914-29751562,29751568-29751643,
           29753891-29753957,29754097-29754998,29756579-29756790
          Length = 939

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 466 VGGVFHNTDRSISFMQRVVALHDITVASL 380
           +GGVFHN D  +SF    +   D TVAS+
Sbjct: 737 MGGVFHNEDGVLSFFIGSLGNVDQTVASI 765


>04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285
          Length = 488

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 120 AVSSQSIIRHDVTHGHGNEGQSYHVVPVAAHHG 218
           AV +  ++RH V H  G +G+  H   V  H G
Sbjct: 149 AVYNIGLLRHSVAHPGGGDGEHGHYYIVTLHPG 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,813,861
Number of Sequences: 37544
Number of extensions: 423251
Number of successful extensions: 1031
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)