Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30114
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016433-6|AAB65391.1|  335|Caenorhabditis elegans Seven tm rece...    32   0.37 
U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans GDP-4-keto-6-...    31   1.1  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine re...    29   3.4  
AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical ...    29   3.4  

>AF016433-6|AAB65391.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 131 protein.
          Length = 335

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 364 VPSVRVFDFVFKCIFGMSIIIFILRLVSMMYWRVFMVC 251
           + +V +F F+F C+FG S  + I  L +  ++R   VC
Sbjct: 80  IRNVPIFGFLFTCLFGSSFGLCISLLSTQFFYRYLAVC 117


>U00035-6|AAA50647.1|  315|Caenorhabditis elegans Hypothetical
           protein R01H2.5 protein.
          Length = 315

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/82 (29%), Positives = 38/82 (46%)
 Frame = -2

Query: 544 DGSTVVQARHALRSSVLDDCVETIVLVGGVFHNTDRSISFMQRVVALHDITVASLVLALQ 365
           D   + + R    S      +    +VGG+FHN   ++ F ++ +A++D      VLAL 
Sbjct: 41  DLENLEETRELFESVKPTHVIHLAAMVGGLFHNLAHNLQFFRKNMAIND-----NVLAL- 94

Query: 364 VPSVRVFDFVFKCIFGMSIIIF 299
                 FD V KC+  +S  IF
Sbjct: 95  ---CHEFD-VIKCVSCLSTCIF 112


>AM231686-1|CAJ77755.1|  315|Caenorhabditis elegans
           GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
           protein.
          Length = 315

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/82 (29%), Positives = 38/82 (46%)
 Frame = -2

Query: 544 DGSTVVQARHALRSSVLDDCVETIVLVGGVFHNTDRSISFMQRVVALHDITVASLVLALQ 365
           D   + + R    S      +    +VGG+FHN   ++ F ++ +A++D      VLAL 
Sbjct: 41  DLENLEETRELFESVKPTHVIHLAAMVGGLFHNLAHNLQFFRKNMAIND-----NVLAL- 94

Query: 364 VPSVRVFDFVFKCIFGMSIIIF 299
                 FD V KC+  +S  IF
Sbjct: 95  ---CHEFD-VIKCVSCLSTCIF 112


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/82 (23%), Positives = 29/82 (35%)
 Frame = +2

Query: 263 HAPVHHGDQPQYEDYDAHPKYAFEYKIEDPHTGDLKSQHETRDGDVVKGYYSLHEADGSI 442
           H+P HHG   ++    AH  +   +     H G  +S           G++  H      
Sbjct: 556 HSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGH 615

Query: 443 RVVEYSADKHNGFNAVVKHTAP 508
               Y A  H+G +    H AP
Sbjct: 616 HGAGYGA--HHGHHGAHHHHAP 635



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +2

Query: 257 HEHAPVHHGDQPQYEDYDAHPKYAFEYKIEDPHTGDLKS-QHETRDGD 397
           H HAP HHG   ++    AH  +  E+     H G   S  H    G+
Sbjct: 461 HHHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGE 508


>AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine
           receptor, class z protein63 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 203 YWYNMVGLTFIPMTMSHIV 147
           Y+Y MV +TFIP  ++HI+
Sbjct: 52  YFYKMVKITFIPSLLTHII 70


>AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical
           protein C16A11.5 protein.
          Length = 643

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 201 VAAHHGAPTIHAAPVLVHTMNTRQYIMETSL 293
           V  H   PT H +P++  +++  QYI +T +
Sbjct: 84  VRIHRNFPTSHRSPIIYKSLDNNQYIYKTDV 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,594,692
Number of Sequences: 27780
Number of extensions: 351413
Number of successful extensions: 951
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)