Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30114
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.9  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   3.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.0  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 712 YHDRTLIYESILN*VL 665
           YHD+TL+Y S L  VL
Sbjct: 115 YHDKTLLYMSKLTLVL 130


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
 Frame = -1

Query: 317 DEHH-NLHIEAGLHDVLARVHGMHEHGCSV 231
           D HH      A     L  +H +H HGC V
Sbjct: 75  DVHHFESSFNAQSWQRLTSLHELHVHGCKV 104


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 498 CLTTALKPLCLSAEY 454
           CLT  ++P C+  EY
Sbjct: 44  CLTVGMRPECMVPEY 58


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 498 CLTTALKPLCLSAEY 454
           CLT  ++P C+  EY
Sbjct: 247 CLTVGMRPECVVPEY 261


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 225 SELHDALLLVQHGRIDLHSHDHES 154
           S+LH  +  + HG +++H     S
Sbjct: 79  SDLHALVEFIYHGEVNVHQRSLSS 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,006
Number of Sequences: 438
Number of extensions: 4417
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)