Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30114
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11340.1 68417.m01830 Toll-Interleukin-Resistance (TIR) domai...    29   2.4  
At4g14070.1 68417.m02172 AMP-binding protein, putative similar t...    29   3.2  
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P...    28   5.5  

>At4g11340.1 68417.m01830 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 495

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 473 NGFNAVVKHTAPQSMPSLYNSTTIIKNAFILAVA*NSNHPNFT 601
           NG N V    AP+  P   N   +IK++ I  V  + N+P  T
Sbjct: 250 NGINVVTDEDAPRGKPIDENLLKLIKDSRIAVVIFSENYPEST 292


>At4g14070.1 68417.m02172 AMP-binding protein, putative similar to
           AMP-binding protein [gi:1617272] from Brassica napus;
           contains Pfam AMP-binding enzyme domain PF00501;
           identical to cDNA acyl-CoA synthetase-like protein
           GI:20799730
          Length = 727

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +2

Query: 314 HPKYAFEYKIEDPHTGDL-----KSQHETRDGDVVKGYY 415
           HP +  E+KI DP T ++     K   + R   V+KGYY
Sbjct: 520 HPMHGTEFKIVDPETNNVLPPGSKGIIKVRGPQVMKGYY 558


>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to At3g24380, At5g36840,
            At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
            At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
            At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
            At1g25886, At4g03300
          Length = 1463

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 260  HGMHEHGCSVYSRSSMMRCYWY 195
            HG+    C++YS+    +C+WY
Sbjct: 1234 HGISMPPCAIYSKKMADKCWWY 1255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,700,840
Number of Sequences: 28952
Number of extensions: 327779
Number of successful extensions: 796
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)