Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30113
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    29   0.66 
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    27   2.0  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   2.0  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   4.6  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   8.1  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    25   8.1  

>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = +3

Query: 288 FYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTGLVNQCYGNCEDPGKRR 467
           F   + G+E +  G   A++  D + + YR  G    RG+++  ++ +  G      K +
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIITSYRCHGFAYTRGLSIRSIIGELMGRQCGASKGK 166

Query: 468 QMPVHYGSKH 497
              +H  +K+
Sbjct: 167 GGSMHIFAKN 176


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 100 FFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSHMDKIYMN---HK 270
           +F  ++Y+ I     +DNN  ++D N  PN + ++  + Y +  Q  +     +N   HK
Sbjct: 268 YFPNSTYQNI--LNSLDNNPAVLDLNGPPNQESSSSASSYGSRTQTPNARSCSLNIVFHK 325

Query: 271 DK 276
            K
Sbjct: 326 HK 327


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +1

Query: 85  VSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSH 243
           +SE+++      + +P Y + D      DK+  PN+D   +  +  T+V L +
Sbjct: 592 LSEIRYSLRELVQDLPSYSLFDTLWVFYDKHIYPNVDPDYISTLIDTLVSLEN 644


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 299 QLRRGGHPHRQRLGTLTERFGLQSIQRS-RSVFIPRDDCYGTCEPVLR 439
           ++RR G  +RQ   T  +RF + S + S    +  + D    CE +L+
Sbjct: 641 RIRRAGFAYRQAFDTFAQRFAVLSGKTSYAGEYTWQGDDKSACEQILK 688


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 438 RNTGSQVP*QSSLGIKTLLLLCI 370
           +NTG+ +P Q S  ++ L LLC+
Sbjct: 711 QNTGAAIPLQISTNLRLLPLLCL 733


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 118 YEPIPIYRVMD-NNGQIIDKNEEPNLDKATLINMYKTMVQLSHMDKIYMN 264
           Y+ + + RV+  +  Q+    ++ NLDK  L+N  K+   + HM    +N
Sbjct: 134 YKILSLLRVVTFDKDQVYAVGQKYNLDKNNLVNDNKSQSTIPHMTAERLN 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,735
Number of Sequences: 5004
Number of extensions: 62337
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)