Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30113
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   1.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.2  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   6.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.7  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = -1

Query: 430 WFTSPVTVIPRYKNTPTSLY*LKTK--SFGESAEALPMW 320
           W       +PRYK  P+SL  +  K  + G   +  P W
Sbjct: 76  WRGMTFVTVPRYKGVPSSLNVISEKIGNGGRLLQPYPDW 114


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 234 LYHGFVHVNQRSL 196
           +YHG V+V+QRSL
Sbjct: 88  IYHGEVNVHQRSL 100


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 270 RQGRISFYMTNYGEEGIHIGSASALSP 350
           ++GR+      YG  G+  G++SA +P
Sbjct: 53  KEGRLRAINPEYGFFGVAPGTSSATNP 79


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 486 RNGPASVSFSRDPR 445
           R+GP SVS S  PR
Sbjct: 127 RDGPPSVSLSSPPR 140


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 481 WTGICLLF 458
           WTG+CL F
Sbjct: 307 WTGVCLTF 314


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 481 WTGICLLF 458
           WTG+CL F
Sbjct: 307 WTGVCLTF 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,961
Number of Sequences: 438
Number of extensions: 4871
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)