Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30112
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 32 0.037
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.46
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 28 0.61
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.4
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch... 27 1.4
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 27 1.4
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 2.5
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 26 2.5
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 2.5
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 26 2.5
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 26 2.5
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 26 3.3
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p... 26 3.3
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 3.3
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 25 4.3
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 25 4.3
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 4.3
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 25 5.7
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 5.7
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.5
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 7.5
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 24 9.9
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 9.9
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 24 9.9
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 32.3 bits (70), Expect = 0.037
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Frame = +1
Query: 7 SDIELKNNS-KHRLSVNQQPLPD--DDSTYDESYLNLRVKQEQTFTI----PSAQKKRKK 165
S++E K NS + S+ Q+ + DD T + V + T TI ++KK+K+
Sbjct: 161 SELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSALSKKKKKR 220
Query: 166 NHKSESVVNSENDIESNTENN 228
N K++ +++ +IE+ TEN+
Sbjct: 221 NRKNQKKKSTKQNIEATTEND 241
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 0.46
Identities = 17/74 (22%), Positives = 38/74 (51%)
Frame = +1
Query: 7 SDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESV 186
SDI +++ LS+ D ++YD++ ++ +T + A+ +++KN ++
Sbjct: 1075 SDINEVDHTIASLSLKLFQAEDTKNSYDQTSPEATQERNRTISSKLAEMEKQKNESKAAL 1134
Query: 187 VNSENDIESNTENN 228
+N + +N ENN
Sbjct: 1135 EQMKNYV-TNIENN 1147
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 28.3 bits (60), Expect = 0.61
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 73 DDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTENNNV 234
+D + D S ++ + S +KK+KK KS+ +N EN T NN+
Sbjct: 35 EDLSMDGSNDGVKDSPDSNDDSQSKKKKKKKLKKSQQPLNEENYPRLQTTENNL 88
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = +1
Query: 151 KKRKKNHKSESVVNSEN-DIESNTENNNV---IGESNFELV 261
KK+K+ KS++ V +N D ESN NN V G N ++V
Sbjct: 19 KKKKRQAKSKNSVAEDNVDRESNDGNNQVNEPTGNDNTQVV 59
>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 232
Score = 27.1 bits (57), Expect = 1.4
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Frame = +1
Query: 4 ESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSES 183
E D K N+K N L D D D+ + K E+ KK HK
Sbjct: 7 EGDENRKENTKSNTKPNFDDLDDLDDILDDLDVPSAFKNEE--------KKNIDEHKQTG 58
Query: 184 VVNSENDIESNTEN-NNVIGE--SNFE 255
+ EN+ N +N N++I E S FE
Sbjct: 59 NTSKENERIKNDDNLNSLIQEMMSKFE 85
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +1
Query: 133 TIPSAQKKRKKNHKSESVVNSEND----IESNTENNN 231
T S +K KKN KSES +S ND S E+NN
Sbjct: 195 TKTSKKKSSKKNSKSESNQDSSNDRSSTAPSTAESNN 231
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 70 DDDSTYDESYLNLRV-KQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTENN 228
+D + Y+ N + ++ F +PS+ + + S S +N+ N+ SNT N
Sbjct: 32 NDSNPYENRSSNSGLNRRNSVFGLPSSGLSSRLSKPSLSSINNSNNSSSNTGGN 85
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 2.5
Identities = 15/71 (21%), Positives = 30/71 (42%)
Frame = +1
Query: 4 ESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSES 183
+ D E S++ ++PLPD +S +K+ + +RK+N S S
Sbjct: 557 KGDEESPRVSRNTSLARRKPLPDTESHSPSPSATSSIKKNPSSIFRRFSSRRKQNKSSTS 616
Query: 184 VVNSENDIESN 216
+ +E++
Sbjct: 617 TLQISAPLETS 627
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 2.5
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 88 DESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVN-SENDIE 210
DES LN +VK Q I AQ+ +++ +SE ++ +E D+E
Sbjct: 339 DESQLNAQVKNVQA-KIRRAQRDQQRQEESEGSLDVTEIDVE 379
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 2.5
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +1
Query: 34 KHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIES 213
K R+ ++ L + + +E L RV E+ A+K R+K K NS +
Sbjct: 76 KERMEYWRRQLLEPEKGSEEYSLKERV--ERYHQELEAKKLRRKQKKVNKEKNSPRLVGE 133
Query: 214 NTENNNVIGESNF 252
NTE ++G S+F
Sbjct: 134 NTELAAIMGISSF 146
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 139 PSAQKKRKKNHKSESVVNSENDIESNTE 222
P+A K N E ++N++ ESN E
Sbjct: 15 PNASVKSSDNDHKEELINNQKSFESNVE 42
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 142 SAQKKRKKNHKSESVVNSENDIESNTENNN 231
S++K +KKN ES+ E ++E EN N
Sbjct: 44 SSKKVQKKNKVIESLNEMEVEMEDENENEN 73
>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 3.3
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +1
Query: 67 PDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTENNNVI 237
P + T Y+ K E P R +H +E+ + EN NTENNN +
Sbjct: 84 PKESLTPGNPYVIWHRKPEMKVGSPYTPSTRPASH-TEAPNDFENHETPNTENNNEV 139
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 166 NHKSESVVNSENDIESNTENNNVIGES 246
N +S SV+ S+ SNT N N G S
Sbjct: 781 NRRSSSVLQSQKSTSSNTSNRNNGGYS 807
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 4.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 215 FDSMSFSEFTTDSLLWFFFLFFCADGIVNV 126
FD +S+S+ D LW F C++ N+
Sbjct: 224 FDDISYSKLIADFQLWMTFKAECSEEKFNI 253
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 4.3
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +1
Query: 37 HRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESN 216
H L+ + DDST D ++LN K T P +K + + S++ S
Sbjct: 93 HDLNCTKGETSSDDSTDDIAFLN--EKMGTLVTTPIGSQKYFGSSSTFSIIQHAAKFASG 150
Query: 217 TENNNVI 237
E++ V+
Sbjct: 151 VESDKVL 157
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 34 KHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKK 156
++ LS +Q + + Y + LN+R+ +E FT+ S KK
Sbjct: 33 QNALSAQKQGDDNAATKYYDELLNVRILRELPFTVNSNYKK 73
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 25.0 bits (52), Expect = 5.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 154 KRKKNHKSESVVNSENDIESNTENNNVIGESNFEL 258
K KKN KS V N+EN S E NN + E+ ++
Sbjct: 582 KEKKNSKSRVVGNTEN---SKDEFNNPLFETEEQI 613
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.0 bits (52), Expect = 5.7
Identities = 17/78 (21%), Positives = 34/78 (43%)
Frame = +1
Query: 28 NSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDI 207
N +HR+ NQ+P+ ++ Y E + Q + + R ++ K S V+ E
Sbjct: 813 NEEHRIRDNQRPVIEEIRIYREKIQT----ETQRLSSLQTELSRLRDEKRNSEVDIERHR 868
Query: 208 ESNTENNNVIGESNFELV 261
++ N++ E + V
Sbjct: 869 QTVESCTNILREKEAKKV 886
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 24.6 bits (51), Expect = 7.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 25 NNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSA 147
NN+K +L +++ L + YD L+V +E T SA
Sbjct: 324 NNNKQQLLISENSLRELQEKYDSVVSELQVVKENKNTSVSA 364
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 24.6 bits (51), Expect = 7.5
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 97 YLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTENNNVIGESNFE 255
Y LR +E+ F S KKR NH E+ +DIE + + +G E
Sbjct: 365 YQKLREVEEECFVGRSGYKKRIINH--ENYRPLMDDIEILLRDQSFVGHPKLE 415
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 24.2 bits (50), Expect = 9.9
Identities = 14/67 (20%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Frame = +1
Query: 49 VNQQPLPDDDSTYDESYLNLRVKQEQT-FT--IPSAQKKRKKNHKSESVVNSENDI--ES 213
+NQ+ + +D+ +D+S +N + E FT I + + + +++ + +S++D+ +
Sbjct: 423 INQELIKEDEGAFDDSDVNSADENEDVDFTGKIGAINNEDESDNEEVAFADSDSDLGGQF 482
Query: 214 NTENNNV 234
+ E++N+
Sbjct: 483 DDEDSNL 489
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 24.2 bits (50), Expect = 9.9
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +1
Query: 112 VKQEQTFTIPSAQKKRKKNHKSESV----VNSENDIESNTE 222
+K+E + +KKR + HK E + V + ND+ S T+
Sbjct: 25 LKEETENQLKELEKKRSQLHKEEQINLQLVYAINDLRSKTK 65
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 34 KHRLSVNQQPLPDDDSTY 87
KH LS N+ P P +S Y
Sbjct: 55 KHHLSGNENPQPSSESPY 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,297,019
Number of Sequences: 5004
Number of extensions: 19530
Number of successful extensions: 153
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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