Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30112
         (464 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   1.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.1  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   2.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   2.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.6  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 187 VNSENDIESNTENNNVIGESNFEL 258
           +NS   IE  T+ NN I E  FEL
Sbjct: 90  INSVVYIEHLTKLNNAIEEKRFEL 113


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 115 KQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTENNNVIGESNF 252
           K E ++       K +   K+E   + E  I S+  NN +   SN+
Sbjct: 289 KNENSYRKYRETSKERSRDKTERERSKERKIISSLSNNYISNISNY 334


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 115 KQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTENNNVIGESNF 252
           K E+ +     + K +   K E   + E  I S+  NN +   SN+
Sbjct: 51  KNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYISNISNY 96


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 115 KQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTENNNVIGESNF 252
           K E+ +     + K +   K E   + E  I S+  NN +   SN+
Sbjct: 51  KNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYISNISNY 96


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +1

Query: 43  LSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTE 222
           LS   Q + +DD  +D+  +N R+       + +  K+  +N  +  V N++ND   NT 
Sbjct: 379 LSNRMQKIVNDDFNFDD--VNFRI-------LGANVKELIRN--THCVNNNQNDNIQNTN 427

Query: 223 NNNVIGESN 249
           N N   + N
Sbjct: 428 NQNDNNQKN 436


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 178 ESVVNSENDIESNTENNNVI 237
           E ++NS ND    T  N+ +
Sbjct: 569 EEIINSSNDEGGKTSPNSAV 588


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,820
Number of Sequences: 438
Number of extensions: 1150
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)