Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30112
(464 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34400.1 68417.m04886 transcriptional factor B3 family protei... 33 0.13
At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4) cont... 32 0.17
At3g23250.1 68416.m02931 myb family transcription factor (MYB15)... 31 0.38
At1g80260.1 68414.m09396 tubulin family protein 31 0.38
At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal hydrolase-r... 31 0.38
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi... 31 0.38
At5g22320.1 68418.m02604 leucine-rich repeat family protein cont... 31 0.51
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ... 31 0.51
At5g54480.1 68418.m06784 hypothetical protein 29 1.2
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 1.2
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 1.2
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 29 2.0
At1g62700.1 68414.m07077 no apical meristem (NAM) family protein... 28 2.7
At4g24040.1 68417.m03454 glycosyl hydrolase family protein 37 / ... 28 3.6
At4g09290.1 68417.m01537 hypothetical protein 27 4.7
At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2 (R... 27 4.7
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote... 27 6.2
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ... 27 6.2
At1g01690.1 68414.m00087 expressed protein 27 6.2
At5g62390.1 68418.m07830 calmodulin-binding family protein conta... 27 8.3
At5g27860.1 68418.m03342 expressed protein 27 8.3
At4g36290.1 68417.m05160 ATP-binding region, ATPase-like domain-... 27 8.3
At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xy... 27 8.3
At4g23750.2 68417.m03417 AP2 domain-containing transcription fac... 27 8.3
At4g23750.1 68417.m03416 AP2 domain-containing transcription fac... 27 8.3
At2g29610.1 68415.m03597 F-box family protein contains Pfam prof... 27 8.3
>At4g34400.1 68417.m04886 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 389
Score = 32.7 bits (71), Expect = 0.13
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 22 KNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTF-----TIPSAQKKRKKNHKSESV 186
K SK + + ++DS Y ES + F TIP +QKK K K E V
Sbjct: 153 KGKSKVEVVEDSDDDEEEDSVYSESSEETETDTDSEFKVAKPTIPKSQKKGK---KKEQV 209
Query: 187 VNSENDIESNTENNN 231
V S +D E E+++
Sbjct: 210 VESSDDEEDEEEDSD 224
>At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4)
contains Pfam domain PF00098: Zinc knuckle; identical to
cDNA CAX-interacting protein 4 GI:27651998
Length = 332
Score = 32.3 bits (70), Expect = 0.17
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +1
Query: 4 ESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSES 183
ES+ E + SK R + +DDS E + RVK++ +++ ++NH +S
Sbjct: 218 ESEDEEEGRSKRRKERRGRKRDEDDSDESEDEDDRRVKRKS--RKEKRRRRSRRNHSDDS 275
Query: 184 VVNSENDIESNTENNNVIGESNFE 255
S D N V S+ E
Sbjct: 276 DSESSEDDRRQKRRNKVAASSDSE 299
>At3g23250.1 68416.m02931 myb family transcription factor (MYB15)
similar to myb-related transcription factor GB:CAA66952
from [Lycopersicon esculentum]
Length = 285
Score = 31.1 bits (67), Expect = 0.38
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 94 SYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTE---NNNVIGESNF 252
++L R++ Q ++ KK+ KSESV+ S N S +E ++N GES F
Sbjct: 110 THLKKRLEDYQPAKPKTSNKKKGTKPKSESVITSSNSTRSESELADSSNPSGESLF 165
>At1g80260.1 68414.m09396 tubulin family protein
Length = 951
Score = 31.1 bits (67), Expect = 0.38
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 46 SVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNT 219
+ NQ DD +++SY ++V ++ +KK H + S + S+ D E NT
Sbjct: 244 TANQSVSVDDAEFWEKSYQLMKVPNSKSNVTSLNEKKVMSGHDANSSLASDKDKEQNT 301
>At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1101
Score = 31.1 bits (67), Expect = 0.38
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 115 KQEQTFTIPSAQKKRKKNHKSESVVNSEND 204
KQE+ T+PS +KK K N K+ + ++S D
Sbjct: 705 KQEEGMTLPSKKKKNKNNKKNSTSMSSHLD 734
>At1g01440.1 68414.m00059 extra-large G-protein-related weak
similarity to extra-large G-protein (AtXLG1)
(GI:3201682) [Arabidopsis thaliana]
Length = 664
Score = 31.1 bits (67), Expect = 0.38
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 70 DDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHK---SESVVNSENDIESNTENN 228
+ D +Y+E Y N ++ + S + +R +N K S N+I SN +NN
Sbjct: 463 ETDVSYNEYYTNTEESEDSRISKASKEGRRPRNRKQSSEHSFAEVTNNISSNDQNN 518
>At5g22320.1 68418.m02604 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 452
Score = 30.7 bits (66), Expect = 0.51
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 64 LPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNSEN 201
L DD T+D +Y N ++EQ+ +K K+N E VN+E+
Sbjct: 273 LDTDDETFD-AYHNKSAEEEQSKEDRKRKKSSKRNKSEEEEVNNED 317
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/69 (18%), Positives = 32/69 (46%)
Frame = +1
Query: 16 ELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESVVNS 195
E + R +++ +++ +E + + + K + + + K+K+ HK E + S
Sbjct: 291 EQSKEDRKRKKSSKRNKSEEEEVNNEDHKSKKKKSKSNTNVDQVETKKKEEHK-EKTIPS 349
Query: 196 ENDIESNTE 222
ND + + E
Sbjct: 350 NNDDDDDAE 358
>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
[Arabidopsis thaliana]
Length = 1576
Score = 30.7 bits (66), Expect = 0.51
Identities = 24/81 (29%), Positives = 38/81 (46%)
Frame = +1
Query: 7 SDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESV 186
SD+ N K SVN+ P + S L +Q + T P A+K +KK K +
Sbjct: 1483 SDLANGNEQKDPESVNRLD-PGKEKESIPSNLVSGNEQPDSNTAP-AKKPKKKKRKLANN 1540
Query: 187 VNSENDIESNTENNNVIGESN 249
+S N++E + NV+ + N
Sbjct: 1541 FDSVNNMEEKMPSTNVLSQGN 1561
>At5g54480.1 68418.m06784 hypothetical protein
Length = 720
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +1
Query: 148 QKKRKKNHKSESVVNSE---NDIESNTENNNVIGESN 249
+KK+KKN + S V SE D+E+NT N V E++
Sbjct: 229 KKKKKKNVRESSSVASEIDKRDVEANTCNGQVADETD 265
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 1.2
Identities = 20/91 (21%), Positives = 44/91 (48%)
Frame = +1
Query: 1 PESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSE 180
P+SD +L +N+ R + ++ + DE Y +L ++ + +T + +++ +
Sbjct: 554 PDSDEDLSDNNDERNRDEIGSVDEESTKSDEEYDDLAMEDKSYWT----DNEEEESRDTI 609
Query: 181 SVVNSENDIESNTENNNVIGESNFELVL*VT 273
S+V+ N E++ N + N +L L T
Sbjct: 610 SMVSQNNHNEASKTNKDDKYSQNLDLFLKTT 640
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 1.2
Identities = 20/91 (21%), Positives = 44/91 (48%)
Frame = +1
Query: 1 PESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSE 180
P+SD +L +N+ R + ++ + DE Y +L ++ + +T + +++ +
Sbjct: 573 PDSDEDLSDNNDERNRDEIGSVDEESTKSDEEYDDLAMEDKSYWT----DNEEEESRDTI 628
Query: 181 SVVNSENDIESNTENNNVIGESNFELVL*VT 273
S+V+ N E++ N + N +L L T
Sbjct: 629 SMVSQNNHNEASKTNKDDKYSQNLDLFLKTT 659
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 28.7 bits (61), Expect = 2.0
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = +1
Query: 1 PESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSE 180
PE K S + + DDS DE+ + E T S KK+KKN+KS
Sbjct: 237 PEVTFSGKKKSSKKKGGSVLASVGDDSVADETKTSDTKNVEVVETGKS--KKKKKNNKSG 294
Query: 181 SVVNSENDIE 210
V E D++
Sbjct: 295 RTVQEEEDLD 304
>At1g62700.1 68414.m07077 no apical meristem (NAM) family protein
similar to NAC2 (GI:6456751) [Arabidopsis thaliana];
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 394
Score = 28.3 bits (60), Expect = 2.7
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 52 NQQPLPDDDSTYDESYLNLRVKQE-QTFTIPSAQKKRKKNHKSESVVNSENDIESNTENN 228
+QQ LP + ++ + NL+ KQE + Q +++ +H ES+ +ES T N
Sbjct: 207 HQQTLPCGLNAFNNNNPNLQCKQELELHYNQMVQHQQQNHHLRESMFLQLPQLESPTSNC 266
Query: 229 NVIGESN 249
N +N
Sbjct: 267 NSDNNNN 273
>At4g24040.1 68417.m03454 glycosyl hydrolase family protein 37 /
trehalase, putative similar to trehalase 1 GMTRE1
GI:4559292 from [Glycine max]
Length = 626
Score = 27.9 bits (59), Expect = 3.6
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 275 LVTQSTSSKL---DSPITLLFSVFDSMSFSEFTTDSLLWFFFLFFC 147
L++ T +KL SP LLFS F S + + SL +FFF F C
Sbjct: 12 LISTHTHNKLFLSSSPFNLLFS-FPSFIYLK-QQRSLFFFFFFFLC 55
>At4g09290.1 68417.m01537 hypothetical protein
Length = 376
Score = 27.5 bits (58), Expect = 4.7
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 145 AQKKRKKNHKSESVVNSENDIESNTENNNVIGESNF 252
AQKK+K N K E VV S+ D + +NV GE +F
Sbjct: 83 AQKKKK-NKKKEVVVESDED----KDEHNVRGEQSF 113
>At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2
(RPN1) contains an APC-complex (cyclosome) and
proteasome component repeat ( PS50248)
Length = 891
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 115 KQEQTFTIPSAQKKRKKNHKSESVVNSENDIESNTE 222
K E T +PS K+K K E + + +++ N E
Sbjct: 16 KDEATLKVPSKDPKKKDEKKDEDLSEEDLELKQNLE 51
>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 822
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 148 QKKRKKNHKSESVVNSENDIESNTENNNVIGESN 249
+++ +KN++ E VVN E ++ + E+ NV E +
Sbjct: 66 EEESRKNNRYERVVNYEFELAEDCEDENVESEDD 99
>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 766
Score = 27.1 bits (57), Expect = 6.2
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 34 KHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQK-KRKKNHKSESVVNSENDIE 210
K + V+Q PLP + Y N K++ PSA++ KR +N +S+ N + ++
Sbjct: 81 KDQEEVSQVPLPLECRRYHNQTGNKMDKEKVPSPPPSARRFKRSRNQRSK---NMDKEVP 137
Query: 211 SNT 219
S T
Sbjct: 138 STT 140
>At1g01690.1 68414.m00087 expressed protein
Length = 742
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 133 TIPSAQKKRKKNHKSESVVNSENDIESNTENNNVIGESNFELVL 264
T ++KRKK E V++EN +++E++ ++G N L L
Sbjct: 381 TARRTKRKRKKRSPQEEEVDNEN---NSSEDSRLMGAKNLHLFL 421
>At5g62390.1 68418.m07830 calmodulin-binding family protein contains
IQ calmodulin-binding motif, Pfam:PF00612
Length = 446
Score = 26.6 bits (56), Expect = 8.3
Identities = 18/77 (23%), Positives = 32/77 (41%)
Frame = +1
Query: 4 ESDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSES 183
E++IE K+R + + D+ + L + + A+KK+ KN K
Sbjct: 146 EAEIEGSGERKYRWTTEIKGGKKDEEGLKLAALKKEKAKAKAIAAAEAEKKKNKNKKKS- 204
Query: 184 VVNSENDIESNTENNNV 234
N +++S EN V
Sbjct: 205 -YNWTTEVKSERENGEV 220
>At5g27860.1 68418.m03342 expressed protein
Length = 177
Score = 26.6 bits (56), Expect = 8.3
Identities = 18/74 (24%), Positives = 37/74 (50%)
Frame = +1
Query: 7 SDIELKNNSKHRLSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKNHKSESV 186
SD+ ++ HR +++ +D D L +R K T ++K+R++ H S+S
Sbjct: 10 SDVSSDSSDSHRRRKDRRHHRRNDR--DRDSLKVRKKSRST-----SKKRRRRQHSSDSS 62
Query: 187 VNSENDIESNTENN 228
+S +D S + ++
Sbjct: 63 DSSYSDSSSESSDS 76
>At4g36290.1 68417.m05160 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Mus musculus] GI:5410255; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 635
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 163 KNHKSESVVNSENDIESNTENNNVIG 240
KN+ VVN ++D +S+ +N VIG
Sbjct: 3 KNYTVADVVNIDSDSDSDDDNGGVIG 28
>At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xylan
endohydrolase isoenzyme X-I, Hordeum
vulgare,PID:g1813595
Length = 544
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 232 HCYFQCLTQCHFQNLP 185
+CY CLT +F+NLP
Sbjct: 454 NCYHMCLTDGNFKNLP 469
>At4g23750.2 68417.m03417 AP2 domain-containing transcription
factor, putative DNA-binding protein Pti6 - Lycopersicon
esculentum,PID:g2213785
Length = 343
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 148 QKKRKKNHKSESVVNSENDIESNTENN 228
+KK+KKN+KS+ V + + I ++ N+
Sbjct: 196 KKKKKKNNKSKKSVTASSSISRSSSND 222
>At4g23750.1 68417.m03416 AP2 domain-containing transcription
factor, putative DNA-binding protein Pti6 - Lycopersicon
esculentum,PID:g2213785
Length = 343
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 148 QKKRKKNHKSESVVNSENDIESNTENN 228
+KK+KKN+KS+ V + + I ++ N+
Sbjct: 196 KKKKKKNNKSKKSVTASSSISRSSSND 222
>At2g29610.1 68415.m03597 F-box family protein contains Pfam profile
PF00646: F-box domain
Length = 328
Score = 26.6 bits (56), Expect = 8.3
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +1
Query: 4 ESDIELKNNSKHR--LSVNQQPLPDDDSTYDESYLNLRVKQEQTFTIPSAQKKRKKN--- 168
E D E+KN H+ ++ + LP + ++E+ ++ E P QK +N
Sbjct: 22 EEDEEVKNLPIHQEEQKIHNENLPKE-KIHNENPQEQKIHNEN----PQEQKIHNENLPV 76
Query: 169 HKSESVVNSENDIESNTENNNV 234
H+ E +++EN E N N+
Sbjct: 77 HQEEEKIHNENPQEQKIHNENL 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,350,784
Number of Sequences: 28952
Number of extensions: 89546
Number of successful extensions: 499
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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