Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30111
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    26   6.0  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   6.0  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.0  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       25   8.0  

>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 697 VVEKFRPKPKKRRLELFQLEWPNGL 623
           + ++  P  KKRRLEL QLE  NG+
Sbjct: 22  ITDELGPDAKKRRLEL-QLEEGNGI 45


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 638 MAKRPFNTNITIVTGLKTWLKYYTPKIYKLLQIK*GIYNIRDPF 507
           +  R   TN+TI  G K  +        KLLQ+    +N++ PF
Sbjct: 765 LLSRNLYTNLTICEGYKKQISSLLVTARKLLQLVNMEFNLKGPF 808


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 359 ASQVRKIAGILTIFITSKLICFTDLRLVISLCFYTML 469
           +S V+ I GIL +  +++++CF   R+ +   FY +L
Sbjct: 84  SSFVKSIVGILEVDASNEILCFR--RICLLCVFYKLL 118


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 254 FTISKLNLDNKFQLTRSSTKTKLK 325
           F ISK N D    LT    KTK+K
Sbjct: 425 FKISKQNFDESLVLTDPKKKTKIK 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,819
Number of Sequences: 5004
Number of extensions: 48456
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)