Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30110
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    30   0.40 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.5  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   6.5  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -2

Query: 688 VKHQHSRATLQPRISAPGTASTGCRTCLRARY-RSGPRCREDAFDNRQRSQASHKSGRSH 512
           V H++  AT  P+I   G +         A+  RSGP  +++AF      + +  + R  
Sbjct: 96  VNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQKRSGPVKKDEAFFAENAPKNALPAERIA 155

Query: 511 CQKPSDAKLL 482
            QK  DAKLL
Sbjct: 156 DQKAVDAKLL 165


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 541 ENVDGCQKHPLCNEDPNGNVPLGK 612
           E + G  K  LC++ P GN+P G+
Sbjct: 634 ETIWGLIKDVLCDDSPEGNLPDGE 657


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 132 SVLVILAAINLTSCAQIEDPCK-TKARIVADDKYCDKYWECDTD 260
           S   I+ A N+    Q  D  K  +  I+ D K+C K W+   D
Sbjct: 102 SEAAIVLAKNIARHRQFSDKVKFQQLDIIKDSKFCSKDWDLILD 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,538
Number of Sequences: 5004
Number of extensions: 65858
Number of successful extensions: 193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)