Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30110
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0128 + 27879969-27880143,27880232-27881323,27883562-278836...    34   0.10 
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     31   0.96 
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903     29   2.9  
09_01_0060 - 942762-943448,943840-943867,944044-944077,944383-94...    29   3.9  
05_07_0360 + 29542854-29542900,29542988-29543129,29543207-295445...    29   5.1  
12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754...    28   6.8  
03_06_0439 + 33952765-33953238,33953368-33953844                       28   6.8  
02_05_1169 + 34656450-34656603,34657321-34657481,34657907-346579...    28   9.0  

>05_07_0128 +
           27879969-27880143,27880232-27881323,27883562-27883698,
           27884179-27884409,27884707-27884730
          Length = 552

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 22/67 (32%), Positives = 29/67 (43%)
 Frame = -2

Query: 682 HQHSRATLQPRISAPGTASTGCRTCLRARYRSGPRCREDAFDNRQRSQASHKSGRSHCQK 503
           H H RA   PR SAP + +    +   A   + PR    A  +   S +   SG S   K
Sbjct: 139 HHHGRAAALPRASAPPSTNIVLPSAAAAAPLTPPRRHLLAATSSSSSSSDRSSGSSKSVK 198

Query: 502 PSDAKLL 482
           P+ A LL
Sbjct: 199 PAAAALL 205


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 190  GSSIWAHDVRFMAARITRTLVQRRPNIVYICSLIKFS 80
            G+  W H+  F  A + +TLV  +P   +  +L++FS
Sbjct: 5254 GAHTWDHEYNFDGASLEKTLVLHKPTKCFEATLVEFS 5290


>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
          Length = 405

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 23/77 (29%), Positives = 34/77 (44%)
 Frame = -2

Query: 721 GGWYHASQRAPVKHQHSRATLQPRISAPGTASTGCRTCLRARYRSGPRCREDAFDNRQRS 542
           GG  H  +R P     ++A    R S+    S G R   + R   G     D  D RQ++
Sbjct: 322 GGGVHDHRRRPAAADGAKAAAHSR-SSGAAKSNGARGKGKERKGEGFLTGGDGGDRRQKT 380

Query: 541 QASHKSGRSHCQKPSDA 491
           + + KSG +   + SDA
Sbjct: 381 REAAKSGDAEV-RTSDA 396


>09_01_0060 -
           942762-943448,943840-943867,944044-944077,944383-944437
          Length = 267

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 697 RAPVKHQHSRATLQPRISAPGTASTGCRTCLRARYRSG 584
           RA V H    A ++P + AP T+S   R   R R+R+G
Sbjct: 60  RAVVLHPPGAAVIRPPLLAPATSSPVRRCHRRTRWRAG 97


>05_07_0360 +
           29542854-29542900,29542988-29543129,29543207-29544529,
           29544642-29544715,29545850-29545964,29546682-29546714
          Length = 577

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 156 INLTSCAQIEDPCKTKARIVADDKYCDKYWECD 254
           ++++  A    PCKTK R+   DK  D   ECD
Sbjct: 542 LHVSRLAPYSCPCKTKRRLEGHDKDEDDVVECD 574


>12_01_0819 +
           7545656-7546006,7546087-7546162,7547196-7547401,
           7547498-7547584,7547673-7547765,7548172-7548326,
           7548470-7548554,7548632-7548718,7548801-7548920,
           7549707-7549808,7549903-7550070
          Length = 509

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 431 GQRYRTASRSAP-CRLGDLSEPSGTRSNLTSKGNRSPQSP 315
           G+   T +   P  RLG +S+P   +S L+S+G+  P SP
Sbjct: 384 GKEKETIAEMLPYLRLGYISDPDEMQSILSSEGDTCPVSP 423


>03_06_0439 + 33952765-33953238,33953368-33953844
          Length = 316

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 586 PNGNVPLGKSCNRYWQCQGRISSAAALPCYVGV*QALAEMRGTTHRGLR 732
           PNG+ P   + N YW+  G     A     +G+ +AL    G   RG++
Sbjct: 84  PNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVK 132


>02_05_1169 +
           34656450-34656603,34657321-34657481,34657907-34657958,
           34658289-34658425,34658775-34658861,34658939-34659226
          Length = 292

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 736 IVAVLGGWYHASQRAPVKHQHSRATLQPRISAPGTAS 626
           +++V+  W  +  + P K +H R   QPR S+P  AS
Sbjct: 245 LLSVVESWLRSETKLP-KKEHPRPETQPRRSSPFDAS 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,743,263
Number of Sequences: 37544
Number of extensions: 486244
Number of successful extensions: 1456
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)