Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30110
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.98
SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20) 31 1.3
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_52309| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_47176| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 29 4.0
SB_3108| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10) 29 5.2
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 29 5.2
SB_5780| Best HMM Match : EGF_CA (HMM E-Value=0) 29 5.2
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 28 9.1
SB_7289| Best HMM Match : EGF_CA (HMM E-Value=0) 28 9.1
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_5020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +2
Query: 329 CDYPWRSNYCEYPKAQINPPI-GTEHCDWLYGIFGHETSCTRYWTCWNGTATEQLCIGG 502
C+ W + CE P NP G HC+ + CT W G A E LC+ G
Sbjct: 1316 CENGWTGDGCEIPDCPGNPDCAGRGHCNTSFD----PPRCTNCSQGWMGQACEDLCVHG 1370
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 32.3 bits (70), Expect = 0.42
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 511 NENAHSCDWPENVDGCQKHP---LCNEDPNGNVPLGKSCNRYWQC 636
NE CD+P NV GC C+E +GN +C+ + C
Sbjct: 354 NEAIGMCDYPSNVPGCSGSSGSGFCHEKSDGNYKDSGNCHGFIMC 398
>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 31.1 bits (67), Expect = 0.98
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 333 SQPSVTPRCLPAKTSPLGQSYCTDCPCHIPNTCRSICHR 217
S +VTP C + +G+ PC+ P CRS+C R
Sbjct: 57 SNNTVTPGCEIVEEVCIGRGNLFSAPCNPPWACRSLCLR 95
>SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)
Length = 1803
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = +3
Query: 69 ACFELNFIKEHIYTMFGRRWTSVLVILAAINLTSCAQIEDPCKTKARIVADDKYCDKYWE 248
AC + F +H T+ SV N C + C K AD K C KY+
Sbjct: 1452 ACVSVPFCSQHCQTLEPGGSCSVEAGYVIDNNGMCYDVRF-CVDKCHDFADPKDCSKYYH 1510
Query: 249 CD 254
CD
Sbjct: 1511 CD 1512
>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 572 SATRTRTVTCP*ASPATGTGSARGGYPRLQRC 667
+ +RTRT P +S A+ GSARGG ++C
Sbjct: 353 TGSRTRTPPTPTSSRASSRGSARGGAKTTKKC 384
>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -2
Query: 709 HASQRAPVKHQHSRATLQ-PRISAPGTASTGCRTCLRARYRSGPRCREDAFDNRQRSQAS 533
H+ A V H A +Q PR G + G TC R S P +D+F+ ++ + S
Sbjct: 1896 HSDDAADVAVAHCIANVQGPRTRTSGLNAAG--TCHLQRRSSTPSSNKDSFEYKKHKEKS 1953
Query: 532 HKSGR 518
+S R
Sbjct: 1954 IRSSR 1958
>SB_52309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +2
Query: 296 FAGKQRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCTRYWTCWNGT 475
F+G + T+ D N+ A+ N IG+ HC G G +CT C G
Sbjct: 46 FSGHGKNCTDANDECVTGNHTCDKNARCNNTIGSYHCTCNPGFSGDGRNCTDIDECVTGN 105
Query: 476 AT 481
T
Sbjct: 106 HT 107
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +2
Query: 272 YDCPNGLVFAGKQRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCTR 451
Y C F+G R T+ + ++ C+ A+ N IG+ HC G G+ +CT
Sbjct: 80 YHCTCNPGFSGDGRNCTDIDECVTGNHTCD-KNAKCNNTIGSYHCMCNPGFSGNGRNCTD 138
Query: 452 YWTCWNG 472
C G
Sbjct: 139 IDECVTG 145
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +2
Query: 272 YDCPNGLVFAGKQRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSC 445
Y C F+G R T+ + ++ C+ A+ IG+ HC G +G+ SC
Sbjct: 121 YHCMCNPGFSGNGRNCTDIDECVTGNHACD-KNARCRNNIGSHHCTCKSGFYGNGASC 177
>SB_47176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 471
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +2
Query: 272 YDCPNGLVFAGKQRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCTR 451
Y C F+G R T+ + + C+ A+ N IG+ HC G G +CT
Sbjct: 125 YHCTCNPGFSGDGRNCTDIDECATGDHTCD-KNAKCNNTIGSYHCRCNPGFSGDGRNCTD 183
Query: 452 YWTCWNGTAT 481
C G T
Sbjct: 184 IDECVTGDHT 193
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/70 (28%), Positives = 27/70 (38%)
Frame = +2
Query: 272 YDCPNGLVFAGKQRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCTR 451
Y C F+G R T+ + + C+ A+ N IG+ HC G G CT
Sbjct: 207 YHCTCNPGFSGDGRNCTDIDECVTGDHTCD-KNAKCNNTIGSYHCTCNPGFSGDGRECTD 265
Query: 452 YWTCWNGTAT 481
C G T
Sbjct: 266 IDECVTGDHT 275
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +2
Query: 272 YDCPNGLVFAGKQRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCTR 451
Y C F+G R T+ + + C+ A+ N IG+ HC G G +CT
Sbjct: 84 YHCMCNPGFSGDGRECTDIDECVTGDHTCD-KNARCNNTIGSYHCTCNPGFSGDGRNCTD 142
Query: 452 YWTCWNGTAT 481
C G T
Sbjct: 143 IDECATGDHT 152
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +2
Query: 272 YDCPNGLVFAGKQRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCTR 451
Y C F+G R T+ + + C+ A+ N IG+ HC G G +CT
Sbjct: 166 YHCRCNPGFSGDGRNCTDIDECVTGDHTCD-KNARCNNIIGSYHCTCNPGFSGDGRNCTD 224
Query: 452 YWTCWNGTAT 481
C G T
Sbjct: 225 IDECVTGDHT 234
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 556 CQKHPLCNEDPNGNVPLGKSCNRYWQC 636
C C E PNG+ + C+R++QC
Sbjct: 1232 CVDTYFCKEKPNGHYADPRDCSRFYQC 1258
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 556 CQKHPLCNEDPNGNVPLGKSCNRYWQC 636
C C + PNG+ + C+R++QC
Sbjct: 1132 CVDTTFCKDKPNGHYADPRDCSRFYQC 1158
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 541 ENVDG-CQKHPLCNEDPNGNVPLGKSCNRYWQC 636
E V+G C C + PNG+ + C++++QC
Sbjct: 876 EVVNGMCVDTTFCKDKPNGHYADPRDCSKFYQC 908
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 526 SCDWPENVDGCQKHPLCNEDPNGNVPL 606
+CDWP VD C + P + P +PL
Sbjct: 1036 TCDWPRYVD-CDRTPTTSGTPTKPIPL 1061
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 138 LVILAAINLTSCAQIEDPCKTK-ARIVADDKYCDKYWECD 254
LV+L A + A +D CK + A D K C KY++CD
Sbjct: 4 LVLLIACFSVARATEDDYCKERDAGCYVDLKDCSKYYQCD 43
>SB_3108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +2
Query: 272 YDCPNGLVFAGKQRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCTR 451
Y C F+G R T+ + + C+ A+ N IG+ HC G G +CT
Sbjct: 343 YHCTCNPGFSGDGRNCTDIDECVTGDHTCD-KNAKCNNTIGSYHCTCNPGFSGDGRNCTD 401
Query: 452 YWTCWNGTAT 481
C G T
Sbjct: 402 IDECVTGDHT 411
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +2
Query: 272 YDCPNGLVFAGKQRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCTR 451
Y C F+G R T+ + + C+ A+ N IG+ HC G G +CT
Sbjct: 220 YHCRCNPGFSGDGRNCTDIDECATGDHICD-KNAKCNNTIGSYHCMCNPGFSGDGRNCTD 278
Query: 452 YWTCWNGTAT 481
C G T
Sbjct: 279 IDECVTGDHT 288
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +2
Query: 272 YDCPNGLVFAGKQRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCTR 451
Y C F+G R T+ + + C+ A+ N IG+ HC G G +CT
Sbjct: 466 YHCTCNPGFSGDGRNCTDIDECVTGDHTCD-KNAKCNNTIGSYHCMCNPGFSGDGRNCTD 524
Query: 452 YWTCWNGTAT 481
C G T
Sbjct: 525 IDECVTGDHT 534
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/70 (28%), Positives = 27/70 (38%)
Frame = +2
Query: 272 YDCPNGLVFAGKQRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCTR 451
Y C F+G R T+ + + C+ A+ N IG+ HC G G CT
Sbjct: 384 YHCTCNPGFSGDGRNCTDIDECVTGDHTCD-KNAKCNNTIGSYHCMCNPGFSGDGRECTD 442
Query: 452 YWTCWNGTAT 481
C G T
Sbjct: 443 IDECVTGDHT 452
>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
Length = 155
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 138 LVILAAINLTSCAQIEDPCKTK-ARIVADDKYCDKYWECD 254
LV+L A + A +D CK + A D K C KY++CD
Sbjct: 53 LVLLIACFSVARATEDDFCKERDAGCYVDLKDCSKYYQCD 92
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -2
Query: 685 KHQHSRATLQPRISAPGTASTGCRTCLRARYRSGPRCREDAFDNRQRSQASHKSGRSHCQ 506
+ R+ + R +P + + R+ + RS R R R RS SH+ RSH +
Sbjct: 224 RKSRKRSESRSRSRSPKKSRSARRSRSPQKSRSPQRSRSPRSSKRYRSSRSHRKHRSHSR 283
Query: 505 KPS 497
S
Sbjct: 284 SRS 286
>SB_5780| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 263
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +2
Query: 272 YDCPNGLVFAGKQRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCTR 451
Y C F+G R T+ + + C+ A+ N IG+ HC G G +CT
Sbjct: 18 YHCTCNPGFSGNGRECTDIDECVTGDHTCD-KNAKCNNTIGSYHCTCNPGFSGDGRNCTD 76
Query: 452 YWTCWNGTAT 481
C G T
Sbjct: 77 IDECVTGDHT 86
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +2
Query: 272 YDCPNGLVFAGKQRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCTR 451
Y C F+G R T+ + + C+ A+ N IG+ HC G G +CT
Sbjct: 141 YHCTCNPGFSGDGRNCTDIDECLTGDHTCD-KNAKCNNTIGSYHCTCNPGFSGDGRNCTD 199
Query: 452 YWTCWNGTAT 481
C G T
Sbjct: 200 IDECVTGDHT 209
>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -2
Query: 697 RAPVKHQHSRATL-QPRISAPGTASTGCRTCLRARYRSGPRCREDAFDNRQRSQASHKSG 521
RA + +HS+AT+ + A + +T CRT RA + CR D ++ + H
Sbjct: 799 RADCRAEHSQATICRTDCRAEHSQATICRTDCRAEHSQVAICRTDCRAEYLQATSEHLHL 858
Query: 520 R-SHCQKPS 497
+ + C++P+
Sbjct: 859 QIAICRRPA 867
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 333 SQPSVTP-RCLPAKTSPLGQSYCTDC 259
S ++ P RC P + +P GQ+ CT C
Sbjct: 373 SNQTIAPVRCSPGEYAPAGQANCTAC 398
>SB_7289| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 278
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +2
Query: 272 YDCPNGLVFAGKQRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCTR 451
Y C F+G R T+ + + C+ A+ N IG+ HC G G+ CT
Sbjct: 197 YHCMCNPGFSGNGRECTDIDECVTGDHTCD-KNARCNNTIGSYHCMCNPGFSGNGRECTD 255
Query: 452 YWTCWNGTAT 481
C G T
Sbjct: 256 IDECVTGDHT 265
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 511 NENAHSCDWPENVD 552
NE CDWP NVD
Sbjct: 114 NEKTKQCDWPRNVD 127
>SB_5020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/70 (28%), Positives = 27/70 (38%)
Frame = +2
Query: 272 YDCPNGLVFAGKQRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCTR 451
Y C F+G R T+ + + C+ A+ N IG+ HC G G CT
Sbjct: 339 YHCTCNPGFSGDGRECTDIDECVTGDHTCD-KNARCNNTIGSYHCTCNPGFSGDGRECTD 397
Query: 452 YWTCWNGTAT 481
C G T
Sbjct: 398 IDECVTGDHT 407
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,290,525
Number of Sequences: 59808
Number of extensions: 583736
Number of successful extensions: 1878
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1859
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -