Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30110
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1...    28   5.7  
At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar...    28   5.7  
At4g23150.1 68417.m03341 protein kinase family protein contains ...    28   7.5  
At3g16920.1 68416.m02163 glycoside hydrolase family 19 protein s...    28   7.5  

>At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1.3)
           plant glutamate receptor family, PMID:11379626
          Length = 860

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 187 SSIWAHDVRFMAARITRTLVQRRPNI 110
           S IWAHD+ F  AR    +  R PN+
Sbjct: 324 SGIWAHDIAFALARAAEVI--RMPNV 347


>At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar to
           class I chitinase GI:7798656 from [Halimolobos perplexa
           var. perplexa]; contains Pfam profile PF00182: Chitinase
           class I; identical to cDNA chitinase-like protein 1
           (CTL1) CTL1-ELP1 allele GI:17226328
          Length = 321

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 135 VLVILAAINLTSCAQIEDPCKTKARIVADDKYCDKYWECDTDNRY 269
           +LV+LA   L   A  ED    K + V  +K C + WEC   ++Y
Sbjct: 11  ILVLLAVSFLALVANGEDKT-IKVKKVRGNKVCTQGWECSWWSKY 54


>At4g23150.1 68417.m03341 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 659

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -1

Query: 353 NLTSKGNRSPQSPLVVCPQKQVHWGSRIVPIVRVTFPILVAVFV-IGHYSSFGLARVLDL 177
           N T+ G   P  P +  P      G+  V +V V  PI+VAV + I  Y  F        
Sbjct: 246 NETAIGTPPPPLPPLASPSLSDKSGNSNVVVVAVVVPIIVAVLIFIAGYCFFAKRAKKTY 305

Query: 176 GT 171
           GT
Sbjct: 306 GT 307


>At3g16920.1 68416.m02163 glycoside hydrolase family 19 protein
           similar to class I chitinase GI:7798670 from [Arabis
           microphylla]
          Length = 333

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +3

Query: 129 TSVLVILAAINLTSCAQIEDPCKTK---ARIVADDKYCDKYWECDTDNRY 269
           T  LV+     L +    E    T+    +IV   K CDK WEC   + Y
Sbjct: 13  TVALVVFQTGTLVNAEDSEPSSSTRKPLVKIVKGKKLCDKGWECKGWSEY 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,927,554
Number of Sequences: 28952
Number of extensions: 369957
Number of successful extensions: 1060
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)