Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30109
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    29   0.86 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   3.5  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.0  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    25   8.0  

>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 292 QFRSLYPICPPSIPKEFPYSH 230
           Q   L+P  PP+IP  FP SH
Sbjct: 262 QLVGLHPAIPPAIPSMFPMSH 282


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 178  FTAHCDQREREYENLTRSIITLIINLKAFIYFTK 77
            F  + D+ ERE + + R    L+++++ +  FTK
Sbjct: 1042 FGGNTDRLERELDRMARRKFKLVVSMQRYAKFTK 1075


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 96  AFKFIINVIMLLVRFSYSRSR*SQCA--VNAEY 188
           A+ FII+ I LLV   +SR+   +C+  VN +Y
Sbjct: 100 AWAFIIDAISLLVARCFSRANPIKCSNQVNTQY 132


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/44 (20%), Positives = 21/44 (47%)
 Frame = +2

Query: 377 HEVNFSWVAGARVRDGTRHFKENFSAYVLGTLYPVYILLN*YMY 508
           H+++  W+          H+ + +S  +   ++P +  LN Y+Y
Sbjct: 183 HKLHHKWIVPTPYSSHAFHYLDGYSQSLPYHMFPFFFPLNKYVY 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,324
Number of Sequences: 5004
Number of extensions: 49556
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)