Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30109
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   1.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   8.7  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 42  TFVYIGDTWTFSLVKYMNA 98
           T VYIGD   F+L+ Y N+
Sbjct: 199 TLVYIGDNEGFALIIYNNS 217


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 566 YLINANELHVMTGTLCDVSVQLLRSKYIYFY 658
           YL + NE+ +   T+   S  +     IY+Y
Sbjct: 201 YLTDTNEIRIFVATIFTFSYCIPMILIIYYY 231


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 509 STYINLIVYIQDIRFPKHKRKSSL 438
           S + + I+Y   + FP+  R SSL
Sbjct: 295 SGFYSTIMYSNGVTFPQRNRFSSL 318


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 509 STYINLIVYIQDIRFPKHKRKSSL 438
           S + + I+Y   + FP+  R SSL
Sbjct: 295 SGFYSTIMYSNGVTFPQRNRFSSL 318


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 303 YCFFNFVLYIQSARLRFRKNSLIPIRLIHNRVINLFTL 190
           Y    FV+ I+   L +  N ++P  LI +  +  FTL
Sbjct: 218 YIDITFVVIIRRRTLYYFFNLIVPCVLIASMAVLGFTL 255


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 160 QREREYENLTRSII 119
           +RE+EYE L R +I
Sbjct: 48  EREQEYEKLKRKMI 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,481
Number of Sequences: 438
Number of extensions: 4122
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)