Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30107
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CQY2 Cluster: Chromosome undetermined scaffold_242, w...    34   3.0  
UniRef50_A6G4M6 Cluster: Fatty-acid desaturase; n=1; Plesiocysti...    34   3.9  
UniRef50_Q4A6Z7 Cluster: Putative recombination protein; n=1; My...    33   6.8  
UniRef50_UPI00004988D8 Cluster: conserved hypothetical protein; ...    33   9.0  
UniRef50_Q5QN12 Cluster: Integral membrane protein-like; n=4; Or...    33   9.0  

>UniRef50_A0CQY2 Cluster: Chromosome undetermined scaffold_242,
           whole genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_242,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 454

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -3

Query: 535 WFKNYKIF-LQSIQNLINLKTVSLKLNQCSAVLLTCLQKTLNASYVLLRM 389
           WF+ Y I  L+SI  L N K ++   N+C A L T +Q T N    +L++
Sbjct: 181 WFQKYVILTLKSIATLFN-KCIATLFNKCIASLRTAIQATYNFFITILKI 229


>UniRef50_A6G4M6 Cluster: Fatty-acid desaturase; n=1; Plesiocystis
           pacifica SIR-1|Rep: Fatty-acid desaturase - Plesiocystis
           pacifica SIR-1
          Length = 367

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = -2

Query: 134 ATGFVQYTSLL-----QLQR*GMLAQRMLMSALWQFSWQVWY 24
           A GFV++T ++     Q QR G +A  + M+A + F+W  WY
Sbjct: 194 AVGFVEHTGIIVNSYEQYQRWGSIAHPVWMTAAFAFNWLFWY 235


>UniRef50_Q4A6Z7 Cluster: Putative recombination protein; n=1;
           Mycoplasma synoviae 53|Rep: Putative recombination
           protein - Mycoplasma synoviae (strain 53)
          Length = 194

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 473 KLKTKSVFCSTLDLPSENSQCQLCSST 393
           KLK    FCS  ++P EN+ C +C+ T
Sbjct: 49  KLKDNISFCSFCNIPQENNNCYICNDT 75


>UniRef50_UPI00004988D8 Cluster: conserved hypothetical protein;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
           hypothetical protein - Entamoeba histolytica HM-1:IMSS
          Length = 605

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 32  LAKKTATMQTSTFVVLTCLIAVVVADLYIEQNQSPVVDTVQ--ESVYDTPVNDRSPR 196
           +AKK +TM      +  CL ++   + Y+  N+ PVV T+   E  +D P   + PR
Sbjct: 329 IAKKYSTMNCDEEEIKQCLYSIADNNCYLRYNRDPVVKTIHYLEKYFD-PNEAKEPR 384


>UniRef50_Q5QN12 Cluster: Integral membrane protein-like; n=4; Oryza
           sativa|Rep: Integral membrane protein-like - Oryza
           sativa subsp. japonica (Rice)
          Length = 251

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = -3

Query: 493 LINLKTVSLKLNQCS-----AVLLTCLQKTLNASYVLLRMIQGDGSEVGYG 356
           L+N+  VS+    C+     A   TC   TLN++YVLL+ I G  S   YG
Sbjct: 167 LVNVAIVSISGTICANNLSFADTSTCSSLTLNSTYVLLKNILGKSSSTVYG 217


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,296,588
Number of Sequences: 1657284
Number of extensions: 10130012
Number of successful extensions: 25399
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25361
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)