Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30106
         (708 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    24   1.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   2.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   2.4  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   2.4  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   3.2  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   3.2  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.8  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +2

Query: 89  SASLYTLAKPESRSVMPAGSFTAWSTASSLMARC--PQTR-PSGVETILSTLSSARPERQ 259
           SA    + +P   SV P      W  A   + R   PQT  P+G   +   L   +P R+
Sbjct: 59  SAHTVLIPQPLHPSV-PRLGHPQWPFAWGSLXRSSSPQTSAPTGPPIVRCALRKHKPNRK 117

Query: 260 ARTP 271
            RTP
Sbjct: 118 PRTP 121


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 539 INREVTPEPVLHRRSGRSESLQTGTLVSELADSVQN 432
           I+ ++ P P+LH      ESL T   V+  ++ +QN
Sbjct: 97  IHHQIRP-PILHDTQPMCESLNTQPPVTSSSNILQN 131


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 539 INREVTPEPVLHRRSGRSESLQTGTLVSELADSVQN 432
           I+ ++ P P+LH      ESL T   V+  ++ +QN
Sbjct: 97  IHHQIRP-PILHDTQPMCESLNTQPPVTSSSNILQN 131


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -1

Query: 459 QRACGFCPKPNLRFPFQWCSDHGHSCW 379
           Q  C +   PN       C+D   SCW
Sbjct: 15  QLECNWSSGPNATLQSSACTDDLSSCW 41


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 539 INREVTPEPVLHRRSGRSESLQTGTLVSELADSVQN 432
           I+ ++ P P+LH      ESL T   V+  ++ +QN
Sbjct: 97  IHHQIRP-PILHDTQPMCESLNTQPPVTSSSNILQN 131


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 384 NYARGHYTIGKEIVDLVLDRIRKLADQCTG 473
           +YAR     G  IVD+ LD  R L   CTG
Sbjct: 392 SYARAKGLGGIAIVDITLDDFRGL---CTG 418


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 192 HRQDHRGWRRFFQHFLQRDRSGKHVPR 272
           +R++ +GW+   +H L  ++    VPR
Sbjct: 120 YRENKQGWQNSIRHNLSLNKCFVKVPR 146


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 205 IGGGDDSFNTFFSETGAASTY 267
           +GGGD S N+      A  TY
Sbjct: 112 LGGGDTSPNSALQRARADKTY 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,459
Number of Sequences: 336
Number of extensions: 4221
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)