Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30106
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 142 6e-35
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 138 5e-34
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 91 1e-19
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 62 8e-11
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 28 1.5
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 27 2.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 6.1
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 8.0
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 8.0
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 8.0
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 8.0
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 142 bits (343), Expect = 6e-35
Identities = 60/87 (68%), Positives = 73/87 (83%)
Frame = +3
Query: 225 FQHFLQRDRSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 404
F F GK+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY
Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108
Query: 405 TIGKEIVDLVLDRIRKLADQCTGLQGF 485
T+GKE+VD V D+IR++AD C+GLQGF
Sbjct: 109 TVGKELVDEVTDKIRRIADNCSGLQGF 135
Score = 94.3 bits (224), Expect = 2e-20
Identities = 41/63 (65%), Positives = 45/63 (71%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 261
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 262 TYP 270
P
Sbjct: 61 YVP 63
Score = 33.1 bits (72), Expect = 0.040
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +1
Query: 511 TGSGVTSLLMERLSVELTARKSKLGVRHLTPRPQGFQLAVVRGPKNSIL 657
TGSG +LL+ERL++E T +KSKL + P PQ +VV P NS+L
Sbjct: 145 TGSGFGALLLERLAMEYT-KKSKLQF-SVYPAPQ-VSTSVVE-PYNSVL 189
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 138 bits (335), Expect = 5e-34
Identities = 57/87 (65%), Positives = 73/87 (83%)
Frame = +3
Query: 225 FQHFLQRDRSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 404
F F GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHY
Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112
Query: 405 TIGKEIVDLVLDRIRKLADQCTGLQGF 485
T+GKE++D VL+RIR++AD C+GLQGF
Sbjct: 113 TVGKEMIDSVLERIRRMADNCSGLQGF 139
Score = 88.2 bits (209), Expect = 1e-18
Identities = 45/68 (66%), Positives = 47/68 (69%), Gaps = 5/68 (7%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 246
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 247 TGAASTYP 270
TG P
Sbjct: 60 TGQGKFVP 67
Score = 31.5 bits (68), Expect = 0.12
Identities = 26/61 (42%), Positives = 36/61 (59%)
Frame = +1
Query: 511 TGSGVTSLLMERLSVELTARKSKLGVRHLTPRPQGFQLAVVRGPKNSILNQPTKNPLSNS 690
TGSG+ +LL+ERL++E +KS L + P PQ +VV P NS+L T L NS
Sbjct: 149 TGSGLGALLLERLNMEY-GKKSNLQF-SVYPAPQ-VSTSVVE-PYNSVLT--THATLDNS 202
Query: 691 E 693
+
Sbjct: 203 D 203
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 91.1 bits (216), Expect = 1e-19
Identities = 40/77 (51%), Positives = 54/77 (70%)
Frame = +3
Query: 255 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 434
GK+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D V
Sbjct: 57 GKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAV 116
Query: 435 LDRIRKLADQCTGLQGF 485
LD +R+ A+ C LQGF
Sbjct: 117 LDVVRREAEACDALQGF 133
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 261
MRE + + GQ G Q+G A W EHG+ G T + N +F+E
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 262 TYP 270
P
Sbjct: 59 YVP 61
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 62.1 bits (144), Expect = 8e-11
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +3
Query: 234 FLQRDRSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 407
F Q D + +++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+
Sbjct: 52 FYQSDDT-RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YS 109
Query: 408 IGKEIVDLVLDRIRKLADQCTGLQGF 485
+ I + ++D I + AD L+GF
Sbjct: 110 HAERIFEDIMDMIDREADGSDSLEGF 135
Score = 48.8 bits (111), Expect = 8e-07
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +1
Query: 85 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSET 249
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 317 ADLINNSRFKIDEDS--TGYVLAAPVSLKKVLKESSP 213
AD+IN SR+ ID S T + P+SL KE P
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 350 FWMKQLSVCASADLINNSRF--KIDEDSTGYVLAAPVSLKKVLKESSPPPMVLSVGIW 183
F + + S +++N+ + KID GY S K + E + P + G+W
Sbjct: 205 FMAPYIELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3
Query: 180 WPDAHRQDHRGWRRFFQHFLQR 245
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 646 NSILNQPTKNPLSNSEL 696
N +LN+P+ +PLS+S L
Sbjct: 926 NRVLNEPSSSPLSSSSL 942
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 183 PDAHRQDHRGWRRFFQHFLQRDRSGKHVPRAVFVDLEPTV 302
P+ H + G F + F +DR G V VFV+ P +
Sbjct: 22 PEYHNERSLGDSHFLRTFRMQDRKGYDVLIKVFVNKLPEI 61
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 71 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 193
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -2
Query: 284 DEDSTGYVLAAPVSLKKVLKESSPPPMVLSVGIWPSG 174
++D T Y L P+ + L +++PP +V+ +G P G
Sbjct: 834 EKDLTKY-LGPPIYTSQRLYDTTPPGVVMGLGWTPMG 869
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,542
Number of Sequences: 5004
Number of extensions: 68943
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -