Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30104
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0744 + 5548306-5549445 36 0.041
10_01_0088 + 1087807-1088282,1088752-1088974 33 0.17
12_02_0857 + 23736063-23736272,23736485-23736511 29 3.6
02_02_0355 + 9312814-9313650 29 3.6
01_03_0202 - 13762042-13762572 29 3.6
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 29 4.7
04_04_0624 + 26676765-26676879,26676955-26677093,26678012-266780... 29 4.7
03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187 29 4.7
10_08_0223 - 15986763-15987575 28 6.2
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534... 28 6.2
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 28 6.2
02_01_0064 - 470490-470576,471297-471358,471447-471675 28 8.3
>02_01_0744 + 5548306-5549445
Length = 379
Score = 35.5 bits (78), Expect = 0.041
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -1
Query: 525 DERRRHGG--GNCHKGCWRNARGSGCGAGAAWSTSAGCTEAECSSL 394
DERRR GG GN C +A G+ A +A S+S+ T + CSS+
Sbjct: 66 DERRRRGGVGGNGATTCDDSACGARAAASSASSSSSSATTSHCSSV 111
>10_01_0088 + 1087807-1088282,1088752-1088974
Length = 232
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -1
Query: 519 RRRHGGGNCHKGCWRNARG--SGCGAGAAW 436
RR GG +GCWR RG G G G AW
Sbjct: 103 RRGCSGGGRWRGCWRGRRGCRRGSGGGGAW 132
>12_02_0857 + 23736063-23736272,23736485-23736511
Length = 78
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 510 HGGGNCHKGCWRNARGSGCGAGAAWSTSAGCTEAE 406
HGGG W N G G G+ A +T A + +
Sbjct: 36 HGGGGAAPSMWDNLAGGGGGSAVAATTPANLLQQQ 70
>02_02_0355 + 9312814-9313650
Length = 278
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -1
Query: 519 RRRHGGGNCHKGC-WRNARGSGCGAGAAWSTSAGC 418
RR H G+ WR RG GC AG T+ C
Sbjct: 203 RRGHRSGDFPTNRRWRRGRGGGCDAGGGDGTAGRC 237
>01_03_0202 - 13762042-13762572
Length = 176
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = -1
Query: 507 GGGNCHKGCWRNARGSGCGAGAAWSTSAG 421
GGG G W N RGSG GAG W S+G
Sbjct: 94 GGGGGGGGWWWN-RGSGSGAG--WEDSSG 119
>11_06_0425 -
23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -1
Query: 510 HG-GGNCHKGCWRNARGSGCGAGAAWSTSAGCTEAECS 400
HG G C GC G GCGA A +S A+C+
Sbjct: 755 HGKSGGCGSGCGGGCGGGGCGAMAV-ESSKDDVHAKCA 791
>04_04_0624 +
26676765-26676879,26676955-26677093,26678012-26678083,
26678174-26678317,26678402-26678530,26678819-26678938,
26679015-26679076,26679937-26680170,26680259-26680485,
26680551-26680683,26680787-26680944,26681139-26681351,
26681482-26681730
Length = 664
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +2
Query: 479 QQPLWQFPPPCLRLSSILTIRTT*CSRTANERASFRSLRKNIGGRWKTT*VKKEA*TGSL 658
QQPLW + S+LT+ T C+ R RS R + G W KE S+
Sbjct: 282 QQPLWLLILEVITAISLLTVLTL-CTIAGLRRCKARSSRNS--GTWTRAISWKENTVISI 338
Query: 659 HDPALSFKPQLKQ 697
D L+ P++ +
Sbjct: 339 DDDLLANVPKISR 351
>03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187
Length = 297
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 510 HGGGNCHKGCWRNARGSGCGAGA 442
HGGG R RG GCG GA
Sbjct: 36 HGGGRRTAASRRRPRGGGCGRGA 58
>10_08_0223 - 15986763-15987575
Length = 270
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 507 GGGNCHKGCWRNARGSGCGAGAAWSTSAG 421
GGG G W + GSG GAGA + S G
Sbjct: 44 GGGGGTNGGWGS--GSGAGAGAGYGESGG 70
>02_01_0714 +
5339408-5340020,5340117-5340319,5340408-5340605,
5340703-5340774,5341197-5341292,5341828-5341907,
5341993-5342068,5342152-5342362,5342562-5342755,
5342834-5342939,5343037-5343126,5343470-5344206
Length = 891
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -1
Query: 480 WRNARGSGCGAGAAWSTSAGCTEAECS 400
+RN RGSG GAGA + S G AE S
Sbjct: 116 YRNLRGSGSGAGAI-AASGGALLAEAS 141
>01_07_0290 -
42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 500 PPPCLRLSSILTIRTT*CSRTANE--RASFRSLRKNIGGR 613
PP CLR+S++L T CS T+ R + R +++ G R
Sbjct: 228 PPNCLRVSNVLDGNTFSCSGTSTNLLRKALRKIQQIRGSR 267
>02_01_0064 - 470490-470576,471297-471358,471447-471675
Length = 125
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -1
Query: 522 ERRRHGGGNCHKGCWRNARGSGCGAGAAWSTSAGCTEA 409
E R GGG C G + A G GAG AG E+
Sbjct: 44 EWRERGGGGCGGGVYGEAGGVCGGAGGCCCGRAGFVES 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,971,951
Number of Sequences: 37544
Number of extensions: 353091
Number of successful extensions: 1372
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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