Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30104
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3753| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_57402| Best HMM Match : DEAD (HMM E-Value=0.42) 29 3.6
SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9) 29 3.6
SB_50794| Best HMM Match : Cys_knot (HMM E-Value=2.2) 29 3.6
SB_48939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_37849| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_27946| Best HMM Match : DEAD (HMM E-Value=0.42) 29 3.6
SB_21910| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_9872| Best HMM Match : ResIII (HMM E-Value=0.36) 29 3.6
SB_5900| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_366| Best HMM Match : ResIII (HMM E-Value=0.28) 29 3.6
SB_56794| Best HMM Match : ResIII (HMM E-Value=0.63) 29 3.6
SB_48412| Best HMM Match : ResIII (HMM E-Value=0.19) 29 3.6
SB_48295| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_46041| Best HMM Match : LIM (HMM E-Value=1.5) 29 3.6
SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6) 29 3.6
SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4) 29 3.6
SB_27423| Best HMM Match : ResIII (HMM E-Value=0.56) 29 3.6
SB_27311| Best HMM Match : DEAD (HMM E-Value=0.17) 29 3.6
SB_15115| Best HMM Match : ResIII (HMM E-Value=0.24) 29 3.6
SB_13172| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_5505| Best HMM Match : ResIII (HMM E-Value=0.55) 29 3.6
SB_2121| Best HMM Match : ResIII (HMM E-Value=0.46) 29 3.6
SB_43554| Best HMM Match : LIM (HMM E-Value=0.91) 29 4.8
SB_22386| Best HMM Match : HLH (HMM E-Value=1.6e-13) 29 4.8
SB_53226| Best HMM Match : ResIII (HMM E-Value=0.45) 29 4.8
SB_55623| Best HMM Match : ResIII (HMM E-Value=0.17) 28 6.4
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4) 28 8.4
>SB_3753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+RY CEDCG ++ CG
Sbjct: 704 SDYRYLCEDCGKPYSTCDCG 723
>SB_57402| Best HMM Match : DEAD (HMM E-Value=0.42)
Length = 428
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 338 SDYRCLCEDCGNPYSTCDCG 357
>SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)
Length = 521
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 273 SDYRCLCEDCGNPYSTCDCG 292
>SB_50794| Best HMM Match : Cys_knot (HMM E-Value=2.2)
Length = 396
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 134 SDYRCLCEDCGNPYSTCDCG 153
>SB_48939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 590 SDYRCLCEDCGNPYSTCDCG 609
>SB_37849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1213
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 895 SDYRCLCEDCGNPYSTCDCG 914
>SB_27946| Best HMM Match : DEAD (HMM E-Value=0.42)
Length = 751
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 433 SDYRCLCEDCGNPYSTCDCG 452
>SB_21910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 15 SDYRCLCEDCGNPYSTCDCG 34
>SB_9872| Best HMM Match : ResIII (HMM E-Value=0.36)
Length = 624
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 338 SDYRCLCEDCGNPYSTCDCG 357
>SB_5900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 842 SDYRCLCEDCGNPYSTCDCG 861
>SB_366| Best HMM Match : ResIII (HMM E-Value=0.28)
Length = 1104
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCG ++R CG
Sbjct: 927 SDYRCLCEDCGKPYSRCDCG 946
>SB_56794| Best HMM Match : ResIII (HMM E-Value=0.63)
Length = 532
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 226 SDYRCLCEDCGNPYSTCDCG 245
>SB_48412| Best HMM Match : ResIII (HMM E-Value=0.19)
Length = 1390
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 1072 SDYRCLCEDCGNPYSTCDCG 1091
>SB_48295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 951 SDYRRLCEDCGNPYSTCDCG 970
>SB_46041| Best HMM Match : LIM (HMM E-Value=1.5)
Length = 1236
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 918 SDYRRLCEDCGNPYSTCDCG 937
>SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 876 SDYRCLCEDCGNPYSTCDCG 895
>SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 949
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 871 SDYRCLCEDCGNPYSTCDCG 890
>SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)
Length = 992
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 784 SDYRCLCEDCGNPYSTCDCG 803
>SB_27423| Best HMM Match : ResIII (HMM E-Value=0.56)
Length = 562
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 436 SDYRCLCEDCGNPYSTCDCG 455
>SB_27311| Best HMM Match : DEAD (HMM E-Value=0.17)
Length = 1178
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 858 SDYRCLCEDCGNPYSTCDCG 877
>SB_15115| Best HMM Match : ResIII (HMM E-Value=0.24)
Length = 1179
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 873 SDYRCLCEDCGNPYSTCDCG 892
>SB_13172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 599
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCG ++R CG
Sbjct: 422 SDYRCLCEDCGKPYSRCDCG 441
>SB_5505| Best HMM Match : ResIII (HMM E-Value=0.55)
Length = 1346
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 1027 SDYRCLCEDCGNPYSTCDCG 1046
>SB_2121| Best HMM Match : ResIII (HMM E-Value=0.46)
Length = 1106
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 895 SDYRCLCEDCGNPYSTCDCG 914
>SB_43554| Best HMM Match : LIM (HMM E-Value=0.91)
Length = 334
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 15 SDYRCLCEDCGNPYSTCGCG 34
>SB_22386| Best HMM Match : HLH (HMM E-Value=1.6e-13)
Length = 470
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = -3
Query: 343 PNHCFKRSVNARIIENTGLDHG---QEVPIRQSNI---SKTQFNSLTAV 215
PN CF+ + ++++ N D +E+P R+SN+ SK Q N + V
Sbjct: 287 PNSCFQENYLSKLLANNKYDKNRVEEELPTRKSNLPFNSKIQTNEVELV 335
>SB_53226| Best HMM Match : ResIII (HMM E-Value=0.45)
Length = 880
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R CEDCGN ++ CG
Sbjct: 797 SDYRCLCEDCGNPYSTCGCG 816
>SB_55623| Best HMM Match : ResIII (HMM E-Value=0.17)
Length = 755
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCG 555
+D+R+ CEDCG ++ CG
Sbjct: 474 SDYRFLCEDCGKPYSTWDCG 493
>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 507 GGGNCHKGCWRNARGSG-CGAGAAWSTSAGC 418
G G C KGC +G G CG G + AGC
Sbjct: 267 GCGTCGKGCGTCGKGCGTCGKGCG-TCGAGC 296
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 507 GGGNCHKGCWRNARGSG-CGAGAAWSTSAGC 418
G G C KGC + +G G CG G + GC
Sbjct: 253 GWGTCGKGCRTSGKGCGTCGKGCG-TCGKGC 282
>SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 777
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 328 KRSVNARIIENTGLDHGQEVPIRQSNI 248
K VNA I E+ GLD G VPI +S +
Sbjct: 477 KPCVNALIREDEGLDEGSTVPIVESPV 503
>SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4)
Length = 571
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 614 NDHRYSCEDCGNWHARLPCGC 552
+D+R CEDCG ++ C C
Sbjct: 276 SDYRCLCEDCGKPYSTCDCNC 296
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,192,538
Number of Sequences: 59808
Number of extensions: 370008
Number of successful extensions: 1206
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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