Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30104
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68336-3|CAA92735.1| 710|Caenorhabditis elegans Hypothetical pr... 33 0.20
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.1
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 5.6
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.6
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.6
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 7.4
U39472-5|AAK31393.1| 128|Caenorhabditis elegans Hypothetical pr... 28 7.4
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 28 7.4
>Z68336-3|CAA92735.1| 710|Caenorhabditis elegans Hypothetical
protein F22B3.4 protein.
Length = 710
Score = 33.1 bits (72), Expect = 0.20
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = -3
Query: 385 LAVDDAYCHHSTVVPN-HCFKRSVNARIIENTGLDHGQEVPIRQSNISKTQFNSLTAVSR 209
LA+ D + VV N H +K+S+NA ++ G + I S++ ++ + V R
Sbjct: 608 LAMVDEFLSICMVVCNDHVYKKSLNA--LQQVVARKGAPIIIADSSVPESDLAGMKHVLR 665
Query: 208 SNVTMN*IKLIITIICCYRLIAHITVRRNAREDR 107
T++ ++ I+T+I L HI A DR
Sbjct: 666 VPRTVDCVQNILTVIPLQLLSYHIAELNGANVDR 699
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 354 VPLFPTIVSKGPLTQE*SKTLGWITGKKFQSDSPTFLKHSSIHSQPYRGQ 205
+P FPT + P QE + ++FQ+ P HSSI S P + Q
Sbjct: 236 IPSFPTSNAASPPVQEFAPPPPQQQQQQFQAPPPPMASHSSISSTPVQQQ 285
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = +3
Query: 213 DTAVSELNCVLEMLDCLIGTSCP*SNPVFSIILALTDLLKQWLGTTVL*WQYASSTASC 389
+TA+ E NC L+ DC+ G C N +K LG L W S C
Sbjct: 1635 ETAIDESNCALDEKDCVFGL-CRRENAQV-YCNCYDGYMKDSLGNCTLAWDMCSLNNPC 1691
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 525 DERRRH-GGGNCHKGCWRNARGSGCGAGAAWSTSAGCTEAECSS 397
D R H G+C+ C +N G C + AAW T CSS
Sbjct: 1947 DSRSCHPNSGDCYL-CEQNTDGRHCESCAAWFYGDAVTAKNCSS 1989
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 525 DERRRH-GGGNCHKGCWRNARGSGCGAGAAWSTSAGCTEAECSS 397
D R H G+C+ C +N G C + AAW T CSS
Sbjct: 1947 DSRSCHPNSGDCYL-CEQNTDGRHCESCAAWFYGDAVTAKNCSS 1989
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 525 DERRRH-GGGNCHKGCWRNARGSGCGAGAAWSTSAGCTEAECSS 397
D R H G+C+ C +N G C + AAW T CSS
Sbjct: 1947 DSRSCHPNSGDCYL-CEQNTDGRHCESCAAWFYGDAVTAKNCSS 1989
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 525 DERRRH-GGGNCHKGCWRNARGSGCGAGAAWSTSAGCTEAECSS 397
D R H G+C+ C +N G C + AAW T CSS
Sbjct: 1947 DSRSCHPNSGDCYL-CEQNTDGRHCESCAAWFYGDAVTAKNCSS 1989
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -1
Query: 507 GGGNCHKGCWRNARGSGCGAGAAWSTSAG 421
GGG C GC G GCG G G
Sbjct: 125 GGGGCGGGCGGGG-GGGCGGGGGGGCGGG 152
>U39472-5|AAK31393.1| 128|Caenorhabditis elegans Hypothetical
protein B0304.4 protein.
Length = 128
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 93 CSCAIGD*NFIEKCGRQVPSKALA 22
CS AIG NF+ KC ++ P +L+
Sbjct: 56 CSAAIGRVNFVSKCLKKFPEVSLS 79
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 522 ERRRHGGGNCHKGCWRNARGSGCGAGAAWSTSAGCTEAECSS 397
+++ + GG C GC + G+ CG G S G CSS
Sbjct: 2125 QQQNNCGGGCGGGC--SGGGNSCGGGCNSGGSCGGGGGGCSS 2164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,592,256
Number of Sequences: 27780
Number of extensions: 271039
Number of successful extensions: 953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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