Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30102
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 146 2e-36
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 146 3e-36
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 26 6.1
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 26 6.1
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 8.1
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 8.1
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 25 8.1
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 8.1
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 146 bits (355), Expect = 2e-36
Identities = 94/229 (41%), Positives = 124/229 (54%), Gaps = 3/229 (1%)
Frame = +2
Query: 17 MKLNVSYPATGMPEVVRSGGRAQASYLLRKAHXXXXXXXXXXXXMEGLCTSCRWRQRQAR 196
MKLN+SYPA G +++ + + K G +
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 197 IPDETGRPDKQPCSSSDVKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 376
P G GH CYRPRRDGERKRKSVRGCIV +L+VLAL IV++G Q+
Sbjct: 61 FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120
Query: 377 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPARKEKKMLN--PDIRH 547
IPGLTD VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P ++ KK P I+
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKKPYTKAPKIQR 180
Query: 548 LRSRG*SPL*FCSVDVIVSL*RRSVFAKRKFSEAEYAKLLAQRKRKESQ 694
L +P +L RR K + AE+A+L+A+R + Q
Sbjct: 181 LV----TPRTLQHKRHRFALKRRQA-EKNREEAAEFAQLMAKRVAEAKQ 224
Score = 90.6 bits (215), Expect = 2e-19
Identities = 45/86 (52%), Positives = 57/86 (66%)
Frame = +3
Query: 54 QKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSR 233
QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQGFPM QGVL R
Sbjct: 13 QKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHR 72
Query: 234 VRLLMSKATHVTDRAAMERENVNQFV 311
VRLL+ +A H R + E + V
Sbjct: 73 VRLLL-RAGHPCYRPRRDGERKRKSV 97
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 146 bits (354), Expect = 3e-36
Identities = 93/229 (40%), Positives = 124/229 (54%), Gaps = 3/229 (1%)
Frame = +2
Query: 17 MKLNVSYPATGMPEVVRSGGRAQASYLLRKAHXXXXXXXXXXXXMEGLCTSCRWRQRQAR 196
MKLN+SYPA G +++ + + K G +
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 197 IPDETGRPDKQPCSSSDVKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 376
P G GH CYRPRRDGERKRKSVRGCIV +L+VLAL I+++G Q+
Sbjct: 61 FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120
Query: 377 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPARKEKKMLN--PDIRH 547
IPGLTD VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P ++ KK P I+
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKKPYTKAPKIQR 180
Query: 548 LRSRG*SPL*FCSVDVIVSL*RRSVFAKRKFSEAEYAKLLAQRKRKESQ 694
L +P +L RR K + AE+A+L+A+R + Q
Sbjct: 181 LV----TPRTLQHKRHRFALKRRQA-EKNREEAAEFAQLMAKRVAEAKQ 224
Score = 90.6 bits (215), Expect = 2e-19
Identities = 45/86 (52%), Positives = 57/86 (66%)
Frame = +3
Query: 54 QKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSR 233
QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQGFPM QGVL R
Sbjct: 13 QKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHR 72
Query: 234 VRLLMSKATHVTDRAAMERENVNQFV 311
VRLL+ +A H R + E + V
Sbjct: 73 VRLLL-RAGHPCYRPRRDGERKRKSV 97
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -3
Query: 708 WRTQPWDSFLFLCASNLA-YSASEN 637
WR QP ++ +F+CA ++ +S+ EN
Sbjct: 511 WRMQPLEALIFICAVFVSVFSSIEN 535
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 4 IDRSHEVKRFVPGNGHARSCS-KWWTSTSFVSFTKS 108
ID S G+GHARS S WW V F K+
Sbjct: 94 IDNSLLAPPLSNGSGHARSRSHAWWLPYIVVEFDKN 129
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 8.1
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Frame = +3
Query: 42 QRACQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVL 221
+RA LFE + Y +R+ + ++L EW G++ V D + + +L
Sbjct: 320 RRAPMDLFEAKRKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLP-LNLSREML 378
Query: 222 TNSRV-----RLLMSKATHVTDRAAMERENVNQFVD 314
+++ + L+ + + + A ++EN F D
Sbjct: 379 QQNKIMKVIRKNLVRRCLDMFNEIAEDKENFKTFYD 414
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 8.1
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 72 VDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRV--AGGNDKQGFPMKQGVLTNSRVRLL 245
VD H F EK + +EA +L + RV ++ + F + + ++ LL
Sbjct: 329 VDFHIDENFIEKNLLEIIEAKKLNGKVDSLQKRVYIEPSSEPENF---EDIKNIAQTSLL 385
Query: 246 MSKATHVTDRAAMERENVNQFVDVL 320
SKA ++ AAM EN + V+
Sbjct: 386 YSKALYLQTLAAMNTENTDDEAPVI 410
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 666 SNLAYSASENLRLAKTLLLQSETMTS 589
S LA SAS NLRLA ++ S+ +S
Sbjct: 19 SPLALSASRNLRLANSVRFASDAASS 44
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 472 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 338
+I + K E + GSTFG +G R++ L H+N QD
Sbjct: 98 VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,958
Number of Sequences: 5004
Number of extensions: 56826
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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