Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30102
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 129 2e-30
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 128 6e-30
02_05_0392 - 28567172-28567261,28567480-28567561,28567730-285677... 29 3.7
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 29 4.8
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 28 8.5
02_05_0956 - 33064104-33066425 28 8.5
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 129 bits (311), Expect = 2e-30
Identities = 76/153 (49%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
Frame = +2
Query: 251 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 424
+G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPK
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPK 138
Query: 425 RASKIRKLFNLSKEDDVRRYV--VKRVLPARKEKKMLN-PDIRHLRSRG*SPL*FCSVDV 595
RASKIRKLFNLSK+DDVR+YV +R + KK+ P I+ L +PL
Sbjct: 139 RASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLV----TPLTLQRKRA 194
Query: 596 IVSL*RRSVFAKRKFSEAEYAKLLAQRKRKESQ 694
++ ++ + AK+K AEY KLLAQR +++ +
Sbjct: 195 RIADKKKRI-AKKKSEAAEYQKLLAQRLKEQRE 226
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/70 (60%), Positives = 53/70 (75%)
Frame = +3
Query: 51 CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNS 230
CQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQGFPMKQGVLT
Sbjct: 12 CQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTAG 71
Query: 231 RVRLLMSKAT 260
RVRLL+ + T
Sbjct: 72 RVRLLLHRGT 81
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 128 bits (308), Expect = 6e-30
Identities = 75/153 (49%), Positives = 100/153 (65%), Gaps = 5/153 (3%)
Frame = +2
Query: 251 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 424
+G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPK
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPK 138
Query: 425 RASKIRKLFNLSKEDDVRRYV--VKRVLPARKEKKMLN-PDIRHLRSRG*SPL*FCSVDV 595
RASKIRKLFNL+K+DDVR+YV +R + KK+ P I+ L +PL
Sbjct: 139 RASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLV----TPLTLQRKRA 194
Query: 596 IVSL*RRSVFAKRKFSEAEYAKLLAQRKRKESQ 694
++ ++ AK+K AEY KLLAQR +++ +
Sbjct: 195 RIAQ-KKQRIAKKKSEAAEYQKLLAQRLKEQRE 226
Score = 98.7 bits (235), Expect = 4e-21
Identities = 43/70 (61%), Positives = 54/70 (77%)
Frame = +3
Query: 51 CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNS 230
CQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQGFPMKQGVLT+
Sbjct: 12 CQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSG 71
Query: 231 RVRLLMSKAT 260
RVRLL+ + T
Sbjct: 72 RVRLLLHRGT 81
>02_05_0392 -
28567172-28567261,28567480-28567561,28567730-28567776,
28568020-28568134,28568405-28568649,28568728-28568799,
28568902-28568982,28569083-28569140,28569231-28569359,
28570124-28570293
Length = 362
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 635 KFSEAEYAKLLAQRKRKESQGCV 703
++S A+YAKL ++RK KE G +
Sbjct: 179 RYSAADYAKLTSERKLKEQSGSI 201
>09_04_0727 +
19765175-19765384,19765523-19765595,19766476-19766570,
19766666-19768450,19768533-19768721,19768816-19768958,
19769075-19769320,19769975-19770059,19770117-19770191,
19770304-19770369,19770466-19770712,19770824-19771242
Length = 1210
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 173 RWRQRQARIPDE-TGRPDKQPCSSSDVKGHSCYRPRRDGERKRKSVRG 313
R+R + ++ DE + RP ++ S+S PRR+G R R+S+RG
Sbjct: 129 RYRSSKNKVDDEVSARPKRKKLSNSSSI------PRREGLRPRRSIRG 170
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 185 RQARIPDET--GRPDKQPCSSSDVKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 358
++ +IP + GR +K+ S++D + PRR R + R C++D + + +
Sbjct: 629 QRGQIPSDALPGRTNKKRKSTADTS----FNPRRRTSRPENASRACVLDGSTTQNRFQFI 684
Query: 359 RKGAQ 373
R+ A+
Sbjct: 685 REEAE 689
>02_05_0956 - 33064104-33066425
Length = 773
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 508 GWEHAFDDITTYIIFFAKV 452
G EHA DD++TYII A V
Sbjct: 24 GVEHATDDVSTYIIHVAHV 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,910,167
Number of Sequences: 37544
Number of extensions: 422727
Number of successful extensions: 1335
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -