Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30100
(637 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 168 3e-42
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 7e-42
SB_56| Best HMM Match : Actin (HMM E-Value=0) 167 7e-42
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 167 9e-42
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 9e-42
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 3e-41
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 146 1e-35
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 1e-13
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 1e-09
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 54 1e-07
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 51 7e-07
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 38 0.005
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 168 bits (409), Expect = 3e-42
Identities = 77/82 (93%), Positives = 80/82 (97%)
Frame = +2
Query: 2 RCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 181
RCPEA+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK
Sbjct: 219 RCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 278
Query: 182 EITALAPSTMKIKIIAPPERKY 247
EI+ALAP TMKIKIIAPPERKY
Sbjct: 279 EISALAPPTMKIKIIAPPERKY 300
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +1
Query: 256 IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 360
IGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 304 IGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 167 bits (406), Expect = 7e-42
Identities = 76/82 (92%), Positives = 80/82 (97%)
Frame = +2
Query: 2 RCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 181
RCPEA+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG+TMYPGIADRMQK
Sbjct: 257 RCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQK 316
Query: 182 EITALAPSTMKIKIIAPPERKY 247
EIT+LAP TMKIKIIAPPERKY
Sbjct: 317 EITSLAPPTMKIKIIAPPERKY 338
Score = 78.2 bits (184), Expect = 5e-15
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +1
Query: 256 IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 360
IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 342 IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 167 bits (406), Expect = 7e-42
Identities = 76/82 (92%), Positives = 80/82 (97%)
Frame = +2
Query: 2 RCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 181
RCPEA+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG+TMYPGIADRMQK
Sbjct: 256 RCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQK 315
Query: 182 EITALAPSTMKIKIIAPPERKY 247
EIT+LAP TMKIKIIAPPERKY
Sbjct: 316 EITSLAPPTMKIKIIAPPERKY 337
Score = 78.2 bits (184), Expect = 5e-15
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +1
Query: 256 IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 360
IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 341 IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 167 bits (405), Expect = 9e-42
Identities = 76/82 (92%), Positives = 80/82 (97%)
Frame = +2
Query: 2 RCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 181
RCPEA+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG+TMYPGIADRMQK
Sbjct: 257 RCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQK 316
Query: 182 EITALAPSTMKIKIIAPPERKY 247
EI+ALAP TMKIKIIAPPERKY
Sbjct: 317 EISALAPPTMKIKIIAPPERKY 338
Score = 78.2 bits (184), Expect = 5e-15
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +1
Query: 256 IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 360
IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 342 IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 167 bits (405), Expect = 9e-42
Identities = 76/82 (92%), Positives = 80/82 (97%)
Frame = +2
Query: 2 RCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 181
RCPEAL QPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTV+SGGTTMYPG+ADRMQK
Sbjct: 230 RCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYPGLADRMQK 289
Query: 182 EITALAPSTMKIKIIAPPERKY 247
EI+ALAPSTMKIKIIAPPERKY
Sbjct: 290 EISALAPSTMKIKIIAPPERKY 311
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +1
Query: 256 IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 360
IGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 315 IGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 165 bits (401), Expect = 3e-41
Identities = 75/82 (91%), Positives = 80/82 (97%)
Frame = +2
Query: 2 RCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 181
RCPEA+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG+TM+PGIADRMQK
Sbjct: 256 RCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQK 315
Query: 182 EITALAPSTMKIKIIAPPERKY 247
EI+ALAP TMKIKIIAPPERKY
Sbjct: 316 EISALAPPTMKIKIIAPPERKY 337
Score = 78.2 bits (184), Expect = 5e-15
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +1
Query: 256 IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 360
IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 341 IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 146 bits (354), Expect = 1e-35
Identities = 65/82 (79%), Positives = 74/82 (90%)
Frame = +2
Query: 2 RCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 181
RCPEA+FQP+FLGMEA GIHE YN IMKCDVDIRKDLY+N VLSGG+TM+PGIADRMQK
Sbjct: 30 RCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIRKDLYSNCVLSGGSTMFPGIADRMQK 89
Query: 182 EITALAPSTMKIKIIAPPERKY 247
EI LA ++MK+K+IAPPERKY
Sbjct: 90 EIAMLANASMKVKVIAPPERKY 111
Score = 68.5 bits (160), Expect = 4e-12
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +1
Query: 256 IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 360
IGGSILASLSTFQQMWI+K+EY E GP IVHRKCF
Sbjct: 115 IGGSILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 73.3 bits (172), Expect = 1e-13
Identities = 30/63 (47%), Positives = 43/63 (68%)
Frame = +2
Query: 8 PEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 187
PEALFQP + +E G+ E +N+I D+D R + Y + VLSGG+TMYPG+ R+++EI
Sbjct: 262 PEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREI 321
Query: 188 TAL 196
L
Sbjct: 322 KQL 324
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = +2
Query: 2 RCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSG 139
R E LFQPS LG + GIHE+ + SI KCD+D+R +L+ N VLSG
Sbjct: 2301 RAAEPLFQPSLLGRDIDGIHESIFKSIKKCDIDLRAELFHNIVLSG 2346
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +2
Query: 8 PEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 184
PE F P F + + E N I C +D+R+ LY N VLSGG+TM+ R+Q++
Sbjct: 206 PEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRD 265
Query: 185 ITALAPSTMKI 217
I + +K+
Sbjct: 266 IKRTVDARLKM 276
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/64 (37%), Positives = 31/64 (48%)
Frame = +1
Query: 181 GNHSSRPIDNED*DHCSSREEVLRMIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 360
G +PI+ + H R V GGS+LAS F + +K +YDE GPSI F
Sbjct: 283 GRIKPKPIETQVISHHMQRYAV--WFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
Query: 361 *THR 372
HR
Sbjct: 341 -LHR 343
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 51.2 bits (117), Expect = 7e-07
Identities = 19/64 (29%), Positives = 39/64 (60%)
Frame = +2
Query: 38 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 217
G A G+ + S+ D+DIR L+ + +++GG T+ G +R+ +E+ + P +M++
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Query: 218 KIIA 229
K+I+
Sbjct: 206 KLIS 209
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2
Query: 74 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPS 205
+S++ C +D RK L N VL GGT M PG R+ +EI L S
Sbjct: 64 DSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQS 107
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/28 (53%), Positives = 23/28 (82%)
Frame = +2
Query: 77 SIMKCDVDIRKDLYANTVLSGGTTMYPG 160
+I K D+D+R+ LY+N VLSGG+T++ G
Sbjct: 264 AIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 8 PEALFQPSFLGMEACGIHET 67
PE +FQPS LG+E GI ET
Sbjct: 3 PEIIFQPSMLGLEQAGITET 22
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 122 NTVLSGGTTMYPGIADRMQKEITALAP 202
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1683
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +1
Query: 160 NRRPYAKGNHSSRPIDNED*DHCSSRE--EVLRMIGGSILASLSTFQQMW 303
N RP G S P D+ C+ + EVL + ++ TFQ MW
Sbjct: 1457 NSRPLVYGGSVSSPTDDLPNIFCAGLDLKEVLALRKSKLVTFRKTFQDMW 1506
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,050,262
Number of Sequences: 59808
Number of extensions: 420218
Number of successful extensions: 909
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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