BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30098 (708 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 26 6.1 SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 25 8.0 SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 25 8.0 >SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|||Manual Length = 834 Score = 25.8 bits (54), Expect = 6.1 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +1 Query: 271 RVGSQEAYYQFFLLHDVIPSPWKSIVNIC 357 +VG+ Y FF+L P P+ SI +C Sbjct: 492 QVGNAPPDYLFFILDKNSPEPYGSIKRVC 520 >SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizosaccharomyces pombe|chr 3|||Manual Length = 650 Score = 25.4 bits (53), Expect = 8.0 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +2 Query: 272 VWAHKKLTTSFFYYTMLFLHRGSQS*TSVKYVF 370 +WA L YYT F H+G + +V Y F Sbjct: 236 IWALGVLFYKLCYYTTPFEHQGLAAIMNVSYAF 268 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 25.4 bits (53), Expect = 8.0 Identities = 8/25 (32%), Positives = 13/25 (52%) Frame = +2 Query: 209 IVTVDYPLFRGRIRQWGIYPPVWAH 283 I+T+ YP+ G + W +W H Sbjct: 64 ILTLKYPIEHGIVNNWDDMEKIWHH 88 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,958,236 Number of Sequences: 5004 Number of extensions: 62527 Number of successful extensions: 132 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 130 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 132 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 329179816 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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