Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30098
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9123| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_59383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_56077| Best HMM Match : Exo_endo_phos (HMM E-Value=0.55)            28   6.5  
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_17059| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-34)                 28   8.5  

>SB_9123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 242 RIRQWGIYPPVWAHKKLTTSFFYYTMLFLHRGSQS*TS 355
           R R+ GI+P +      +T  F++TM    RGS S TS
Sbjct: 22  RTREIGIFPSIRHRSPASTKLFFFTMRRGIRGSASFTS 59


>SB_59383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 8/120 (6%)
 Frame = +1

Query: 133 PSTLMLWFLFLFVVKSGTNLE--TYSLNSNC*LPSVSR*NQAVGYLST------RVGSQE 288
           P +  LW   +FV  S   +E  T S  +N  LP         GY         R  S++
Sbjct: 212 PISNSLWSSHIFVSSSDFVIESDTVSNTANDHLPIFVAWKLRAGYSRPTGHKVLRFRSRK 271

Query: 289 AYYQFFLLHDVIPSPWKSIVNIC*VRISLDKLVPVCGIRTPVHCYIRMHRTSYPLGHDDF 468
            +     +HD+   PW ++     V  +LD+   +      VH  I+ HR   PL  D F
Sbjct: 272 NFCTESFMHDLSLVPWSTLDIYDDVNDALDQWYKLFNDILTVHAPIKEHRIKRPLKLDWF 331


>SB_56077| Best HMM Match : Exo_endo_phos (HMM E-Value=0.55)
          Length = 368

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +1

Query: 244 NQAVGYLSTRVGSQEAYYQFFLLHDVIPSPWKSIVNIC*VRISLDKLVPVCGIRTPVHCY 423
           ++  G+   R  S++ +     +HD+   PW ++     V  +LD+   +      VH  
Sbjct: 268 SRPTGHKVLRFRSRKNFRTESFMHDLSLVPWSTLDIYDDVNDALDQWYKLFNDILTVHAP 327

Query: 424 IRMHRTSYPLGHDDF 468
           I+ HR   PL  D F
Sbjct: 328 IKEHRIKRPLKPDWF 342


>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 822

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
 Frame = +1

Query: 163 LFVVKSGTNLETYSLNSNC*LPSVSR*NQAVGYLSTRVGSQEAYYQFFLLHDVIPSP-WK 339
           L V    TNL   S +     PSV+     V  L+T   S+EA Y         P P   
Sbjct: 344 LLVSSCATNLSETSTSVKADTPSVATVASMVNSLATGTISREALYNGVKSDMATPVPSTS 403

Query: 340 SIVNIC*VRISLDKLVPVCGIRT 408
           S+ N C  R+    +    G +T
Sbjct: 404 SVANACISRVVTTTITTSSGGKT 426


>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2021

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 351 HLLSTYFIRQIGTRLRDSNTGALLHTNAPDVLSFRSRRLRI 473
           HL +    ++ GTRL  S TGA++H    +  SF   RLR+
Sbjct: 139 HLCNDDLQKETGTRLY-SLTGAVIHIQPLNFSSFSVERLRV 178


>SB_17059| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-34)
          Length = 333

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 442 SYPLGHDDFVYTRPCTLRVRHFWKGGILVTSRGY 543
           +YP  H+D + TR C + +   W   IL  S  +
Sbjct: 122 AYPFKHNDIITTRRCLMVIIFNWAFSILFASLNF 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,727,362
Number of Sequences: 59808
Number of extensions: 460203
Number of successful extensions: 868
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)