Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30098
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49870.1 68414.m05591 expressed protein ; expression supporte...    30   1.3  
At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) fa...    28   5.3  
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara...    28   5.3  
At3g02890.1 68416.m00284 PHD finger protein-related contains low...    28   7.0  
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL...    27   9.2  

>At1g49870.1 68414.m05591 expressed protein ; expression supported
           by MPSS
          Length = 828

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 25/82 (30%), Positives = 36/82 (43%)
 Frame = -3

Query: 490 EYTVGYIRSRRDLKDKTSGAFVCNNAPVFESRRRVPICLMKYVLNRCSRLTSTVKE*HRV 311
           E  V   RSRRD K    G+ +        +   +P  L KY++   ++L   V E  RV
Sbjct: 359 EPIVSDTRSRRDSK---FGSLMEGKTTRDGTETEIP-SLDKYLVKHMTKLEREVHEAKRV 414

Query: 310 IKKTGSKLLVSPHGWINTPLPD 245
            K+   K    P G  + P+PD
Sbjct: 415 SKEVSEKNKKVPQGVASDPVPD 436


>At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger)
           family protein / pentatricopeptide (PPR)
           repeat-containing protein contains Pfam domains PF01535:
           PPR repeat and PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 1208

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 251 QWGIYPPVWAHKKLTTSFF 307
           +WGIYP +W++  L   +F
Sbjct: 111 EWGIYPDLWSYNTLMCCYF 129


>At2g42170.1 68415.m05219 actin, putative similar to actin 2
           [Arabidopsis thaliana] gi|9293903|dbj|BAB01806
          Length = 329

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 203 ASIVTVDYPLFRGRIRQWGIYPPVWAH 283
           + I+T+DYP+  G +  W     +W H
Sbjct: 19  SGILTLDYPMEHGVVSNWDDMEKIWYH 45


>At3g02890.1 68416.m00284 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 963

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 523 EYHPSKSV*RAEYTVGYIRSRRDLKDKTS 437
           E +PS S+ R   ++ Y +S RDLKD  S
Sbjct: 440 EANPSASISRGNSSIPYAKSPRDLKDLQS 468


>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
            (PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
            (EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
            {Arabidopsis thaliana}; contains Pfam profiles: PF00614
            phospholipase D.active site motif, PF00168 C2 domain
          Length = 1083

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 375  RQIGTRLRDSNTGALLHTNAPDVLSFRSRRLRIY 476
            R++   + +S TG+  + N P  LS +SRR  +Y
Sbjct: 899  REMVDGIDNSGTGSPSNANTPQALSRKSRRFMVY 932


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,111,585
Number of Sequences: 28952
Number of extensions: 317484
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)