Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30097
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5N9 Cluster: Nucleoplasmin isoform 2; n=7; Endoptery...    86   9e-16
UniRef50_UPI00015B5EC5 Cluster: PREDICTED: similar to nucleoplas...    53   6e-06
UniRef50_Q9VAC4 Cluster: CG7911-PA; n=2; Sophophora|Rep: CG7911-...    51   3e-05
UniRef50_Q27415 Cluster: Nucleoplasmin-like protein; n=4; Sophop...    45   0.002
UniRef50_A2I421 Cluster: Nucleoplasmin isoform 1-like protein; n...    42   0.014

>UniRef50_Q2F5N9 Cluster: Nucleoplasmin isoform 2; n=7;
           Endopterygota|Rep: Nucleoplasmin isoform 2 - Bombyx mori
           (Silk moth)
          Length = 187

 Score = 85.8 bits (203), Expect = 9e-16
 Identities = 55/115 (47%), Positives = 57/115 (49%), Gaps = 16/115 (13%)
 Frame = +1

Query: 1   AVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPVXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           AVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV                           
Sbjct: 69  AVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPVHLIGHHLLGALLEEFEDMEEMEEEMLD 128

Query: 181 XXXXXXSQFK----------------DEDNEEGEPKGKKAKCRIMPKAKLHRPRR 297
                 SQFK                DEDNEEGEPKGKKAK     K K   P++
Sbjct: 129 EEEGDDSQFKEDENKRKGAGKRKPNEDEDNEEGEPKGKKAKMSNNAKGKAASPKK 183


>UniRef50_UPI00015B5EC5 Cluster: PREDICTED: similar to
           nucleoplasmin-like protein; n=1; Nasonia
           vitripennis|Rep: PREDICTED: similar to
           nucleoplasmin-like protein - Nasonia vitripennis
          Length = 141

 Score = 53.2 bits (122), Expect = 6e-06
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +1

Query: 1   AVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPVXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           A+L++G++  + LD+ FPD PVTFTL++GSGPV                           
Sbjct: 32  ALLEMGKTSQIILDLSFPDPPVTFTLIKGSGPVHIVGHNLLATHMDEFEDMEDEEVEVDN 91

Query: 181 XXXXXXSQF-KDEDNEEGEPKGKKAKCRIMPK 273
                  +  +DED E+ EPK KK K    PK
Sbjct: 92  FDDDDDEKDPEDEDEEDDEPKKKKNKVGAPPK 123


>UniRef50_Q9VAC4 Cluster: CG7911-PA; n=2; Sophophora|Rep: CG7911-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 156

 Score = 50.8 bits (116), Expect = 3e-05
 Identities = 23/33 (69%), Positives = 28/33 (84%)
 Frame = +1

Query: 1   AVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 99
           AVLKVGE+R +R ++EFP+  VTF LVQGSGPV
Sbjct: 75  AVLKVGETRSLRPNVEFPNGSVTFKLVQGSGPV 107


>UniRef50_Q27415 Cluster: Nucleoplasmin-like protein; n=4;
           Sophophora|Rep: Nucleoplasmin-like protein - Drosophila
           melanogaster (Fruit fly)
          Length = 152

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +1

Query: 1   AVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 99
           AVLK GE+R V  D+EF ++ VTF L++GSGPV
Sbjct: 65  AVLKAGETRAVNPDVEFYESKVTFKLIKGSGPV 97


>UniRef50_A2I421 Cluster: Nucleoplasmin isoform 1-like protein; n=1;
           Maconellicoccus hirsutus|Rep: Nucleoplasmin isoform
           1-like protein - Maconellicoccus hirsutus (hibiscus
           mealybug)
          Length = 176

 Score = 41.9 bits (94), Expect = 0.014
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +1

Query: 4   VLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 99
           VLK G      LD+ FPD PVTF L++GSGP+
Sbjct: 77  VLKGGSQHQSLLDLLFPDPPVTFKLIKGSGPI 108


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,213,656
Number of Sequences: 1657284
Number of extensions: 9663355
Number of successful extensions: 19809
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19807
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)