Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30097
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   4.1  
U61956-3|ABA03115.1|  402|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U61956-2|ABA03113.1|  440|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U61956-1|ABA03114.1|  408|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81122-1|CAB03353.1|  124|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical
           protein F26D2.4 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 376 RYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAA-LPLALFD 257
           RYNY    D T+  + + R   HF+ + L   A LP AL D
Sbjct: 120 RYNYLVRTDSTSQSRKIKRVIQHFINYLLAFLAFLPAALED 160


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +3

Query: 27  ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 125
           ACT+  G  I  C CY   C+         TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +3

Query: 27  ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 125
           ACT+  G  I  C CY   C+         TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219


>U61956-3|ABA03115.1|  402|Caenorhabditis elegans Hypothetical
           protein R13H7.2c protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 430 VIQHRLALYRLEHDWKRAY-VSVSASYILPVKVSANLFIFC 549
           VI   + L+    DW + Y + +S S+++  KV AN  +FC
Sbjct: 300 VIPFVIELFNYHPDWVKVYAIPISGSWLITGKV-ANFVLFC 339


>U61956-2|ABA03113.1|  440|Caenorhabditis elegans Hypothetical
           protein R13H7.2a protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 430 VIQHRLALYRLEHDWKRAY-VSVSASYILPVKVSANLFIFC 549
           VI   + L+    DW + Y + +S S+++  KV AN  +FC
Sbjct: 338 VIPFVIELFNYHPDWVKVYAIPISGSWLITGKV-ANFVLFC 377


>U61956-1|ABA03114.1|  408|Caenorhabditis elegans Hypothetical
           protein R13H7.2b protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 430 VIQHRLALYRLEHDWKRAY-VSVSASYILPVKVSANLFIFC 549
           VI   + L+    DW + Y + +S S+++  KV AN  +FC
Sbjct: 306 VIPFVIELFNYHPDWVKVYAIPISGSWLITGKV-ANFVLFC 345


>Z81122-1|CAB03353.1|  124|Caenorhabditis elegans Hypothetical
           protein T13F2.2 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 203 SSRMKIMKKVNPRAKKRNVE*CQRQSCIAQEECQEMNK 316
           SS  ++ KKV    KK+  +  +RQS   +EE QE+ K
Sbjct: 6   SSEDELEKKVTKEQKKKETKSKKRQSEAVEEEKQEVKK 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,102,760
Number of Sequences: 27780
Number of extensions: 230661
Number of successful extensions: 461
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)