Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30095
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   150   2e-37
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   150   3e-37
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    29   0.83 
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   4.4  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  150 bits (364), Expect = 2e-37
 Identities = 67/84 (79%), Positives = 77/84 (91%)
 Frame = +2

Query: 2   FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
           F P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGSK++K+EI+EA
Sbjct: 16  FLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEA 75

Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
           VTIIETPPMV VGVVGY+ETP GL
Sbjct: 76  VTIIETPPMVVVGVVGYVETPRGL 99



 Score =  124 bits (298), Expect = 2e-29
 Identities = 69/166 (41%), Positives = 95/166 (57%)
 Frame = +1

Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
           P    +L TVWAEH+SE+ +RRFYKNW+             + +    +SI ++ +++ +
Sbjct: 96  PRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAEST--QSINRELERIKK 153

Query: 421 YCSVVRVIAHTQMKLLKQRQKKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQDE 600
           YCSVVRV+AHTQ++     QKKAH+MEIQ+       K       +       S F Q+E
Sbjct: 154 YCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNE 213

Query: 601 MIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHP 738
           MID IGVT+G+  +      G TK+L P +  R  RKVACIGAWHP
Sbjct: 214 MIDVIGVTRGKGNEGTTARWG-TKRL-PRKTHRGLRKVACIGAWHP 257


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  150 bits (363), Expect = 3e-37
 Identities = 66/84 (78%), Positives = 77/84 (91%)
 Frame = +2

Query: 2   FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
           F P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGSK++K+EI+EA
Sbjct: 16  FLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEA 75

Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
           VT+IETPPMV VGVVGY+ETP GL
Sbjct: 76  VTVIETPPMVVVGVVGYVETPRGL 99



 Score =  124 bits (298), Expect = 2e-29
 Identities = 69/166 (41%), Positives = 95/166 (57%)
 Frame = +1

Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
           P    +L TVWAEH+SE+ +RRFYKNW+             + +    +SI ++ +++ +
Sbjct: 96  PRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAEST--QSINRELERIKK 153

Query: 421 YCSVVRVIAHTQMKLLKQRQKKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQDE 600
           YCSVVRV+AHTQ++     QKKAH+MEIQ+       K       +       S F Q+E
Sbjct: 154 YCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNE 213

Query: 601 MIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHP 738
           MID IGVT+G+  +      G TK+L P +  R  RKVACIGAWHP
Sbjct: 214 MIDVIGVTRGKGNEGTTARWG-TKRL-PRKTHRGLRKVACIGAWHP 257


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -3

Query: 771 ARATSERHPKKGMPSSNAGNFPKD--PCVSYGGKLLCVPN 658
           A+ATS  +P+    S++ G   K+  P  +Y G+LLC PN
Sbjct: 412 AKATSIINPQVNGRSNSTGKIGKNYRPRRTYSGRLLCGPN 451


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 647  HLCIL-CPLVTPMQSIISSWANTESNRDRFLQMFSGPFHFVLDG 519
            H CI+   L+  +QS+  S+ N   + D  L++FS     ++DG
Sbjct: 1369 HKCIVNSHLIRGLQSLYISYINDSFSVDNCLRLFSWSHSLLVDG 1412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,824,601
Number of Sequences: 5004
Number of extensions: 84122
Number of successful extensions: 211
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)