Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30095
(848 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 141 6e-34
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 140 2e-33
12_01_1067 - 11009508-11010071,11010122-11010679 31 0.88
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.2
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 30 2.0
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 28 8.2
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 141 bits (342), Expect = 6e-34
Identities = 61/84 (72%), Positives = 74/84 (88%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGSK++KKE EA
Sbjct: 16 FLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEA 75
Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
VTIIETPP+V VG+V Y++TP GL
Sbjct: 76 VTIIETPPLVIVGLVAYVKTPRGL 99
Score = 134 bits (323), Expect = 1e-31
Identities = 75/174 (43%), Positives = 102/174 (58%), Gaps = 1/174 (0%)
Frame = +1
Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
P +L +VWA+H+SE+ RRRFYKNW + + G+K I+ +KM +
Sbjct: 96 PRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKK 155
Query: 421 YCSVVRVIAHTQMKLLK-QRQKKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQD 597
Y S+VRVIAHTQ++ +K +QKKAH+MEIQ+ K + + D+VF +D
Sbjct: 156 YASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKD 215
Query: 598 EMIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSFT 759
EMID IGVTKG+ + G T+ P + R RKVACIGAWHP RVS+T
Sbjct: 216 EMIDIIGVTKGKGYEGVVTRWGVTR--LPRKTHRGLRKVACIGAWHP-ARVSYT 266
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 140 bits (338), Expect = 2e-33
Identities = 60/84 (71%), Positives = 74/84 (88%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
F P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGSK++KKE EA
Sbjct: 16 FLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEA 75
Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
VTIIETPP+V VG+V Y++TP GL
Sbjct: 76 VTIIETPPIVVVGLVAYVKTPRGL 99
Score = 132 bits (320), Expect = 3e-31
Identities = 75/174 (43%), Positives = 101/174 (58%), Gaps = 1/174 (0%)
Frame = +1
Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
P +L +VWA+H+SE+ RRRFYKNW + + G+K I+ +KM +
Sbjct: 96 PRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKK 155
Query: 421 YCSVVRVIAHTQMKLLK-QRQKKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQD 597
Y SVVRVI HTQ++ +K +QKKAH+MEIQ+ K + + D+VF +D
Sbjct: 156 YASVVRVIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKD 215
Query: 598 EMIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSFT 759
EMID IGVTKG+ + G T+ P + R RKVACIGAWHP RVS+T
Sbjct: 216 EMIDIIGVTKGKGYEGVVTRWGVTR--LPRKTHRGLRKVACIGAWHP-ARVSYT 266
>12_01_1067 - 11009508-11010071,11010122-11010679
Length = 373
Score = 31.5 bits (68), Expect = 0.88
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = -3
Query: 336 LLAFVPVFVEATSTVFRHMLRPDSQKSGSP*GVSMYPTTPTQ 211
L AFV F+E T R LRP S+K G G M+P T Q
Sbjct: 303 LNAFVMNFLEQEETRNRQHLRPASKKLGIQAGQLMFPATKRQ 344
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 390 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 506
N +RF +DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>01_06_1201 - 35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 798 WMNNPFLDPARATSERHPKKGMPSSNAGNFPKDPCVSYG 682
W ++D ARAT + KK +PS N P P + G
Sbjct: 1446 WGTQQWIDLARATGLQTSKKELPSPEISNLPDMPLLECG 1484
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 786 PFLDPARATSERHPKKGMPSSNAGNFPKDPCVSYGGKLLCVPN 658
P +DP RA H + +PSS + P PC+ Y + C N
Sbjct: 140 PVVDPLRA----HSRLSLPSSGSPTMPPWPCI-YNVMICCCNN 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,560,895
Number of Sequences: 37544
Number of extensions: 583728
Number of successful extensions: 1354
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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