Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30095
(848 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p pro... 179 5e-45
AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal pr... 179 5e-45
AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE... 179 5e-45
AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB... 179 5e-45
AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA... 179 5e-45
AE014297-1266|AAF54611.1| 125|Drosophila melanogaster CG4863-PC... 162 5e-40
AE014297-1263|AAF54612.2| 161|Drosophila melanogaster CG4863-PD... 162 5e-40
>BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p
protein.
Length = 465
Score = 179 bits (435), Expect = 5e-45
Identities = 91/173 (52%), Positives = 111/173 (64%)
Frame = +1
Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
P AL+ VWA+H+SE+CRRRFYKNWY W D+LG+KSIE DF+KM+R
Sbjct: 107 PFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLR 166
Query: 421 YCSVVRVIAHTQMKLLKQRQKKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQDE 600
YC V+RVIAH+Q++L+KQRQKKAH+MEIQL K +VF QDE
Sbjct: 167 YCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDE 226
Query: 601 MIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSFT 759
MIDC+GVTKG+ + HTKKL P + + RKVACIGAWHP RVS T
Sbjct: 227 MIDCVGVTKGKGFKGVTSR-WHTKKL-PRKTHKGLRKVACIGAWHP-SRVSTT 276
Score = 162 bits (394), Expect = 5e-40
Identities = 72/84 (85%), Positives = 77/84 (91%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+VEA
Sbjct: 27 FYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEA 86
Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
VT++ETPPM+ VG VGYIETP GL
Sbjct: 87 VTVLETPPMIVVGAVGYIETPFGL 110
>AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal
protein L3 protein.
Length = 416
Score = 179 bits (435), Expect = 5e-45
Identities = 91/173 (52%), Positives = 111/173 (64%)
Frame = +1
Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
P AL+ VWA+H+SE+CRRRFYKNWY W D+LG+KSIE DF+KM+R
Sbjct: 96 PFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLR 155
Query: 421 YCSVVRVIAHTQMKLLKQRQKKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQDE 600
YC V+RVIAH+Q++L+KQRQKKAH+MEIQL K +VF QDE
Sbjct: 156 YCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDE 215
Query: 601 MIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSFT 759
MIDC+GVTKG+ + HTKKL P + + RKVACIGAWHP RVS T
Sbjct: 216 MIDCVGVTKGKGFKGVTSR-WHTKKL-PRKTHKGLRKVACIGAWHP-SRVSTT 265
Score = 162 bits (394), Expect = 5e-40
Identities = 72/84 (85%), Positives = 77/84 (91%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+VEA
Sbjct: 16 FYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEA 75
Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
VT++ETPPM+ VG VGYIETP GL
Sbjct: 76 VTVLETPPMIVVGAVGYIETPFGL 99
>AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE,
isoform E protein.
Length = 403
Score = 179 bits (435), Expect = 5e-45
Identities = 91/173 (52%), Positives = 111/173 (64%)
Frame = +1
Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
P AL+ VWA+H+SE+CRRRFYKNWY W D+LG+KSIE DF+KM+R
Sbjct: 83 PFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLR 142
Query: 421 YCSVVRVIAHTQMKLLKQRQKKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQDE 600
YC V+RVIAH+Q++L+KQRQKKAH+MEIQL K +VF QDE
Sbjct: 143 YCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDE 202
Query: 601 MIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSFT 759
MIDC+GVTKG+ + HTKKL P + + RKVACIGAWHP RVS T
Sbjct: 203 MIDCVGVTKGKGFKGVTSR-WHTKKL-PRKTHKGLRKVACIGAWHP-SRVSTT 252
Score = 162 bits (394), Expect = 5e-40
Identities = 72/84 (85%), Positives = 77/84 (91%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+VEA
Sbjct: 3 FYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEA 62
Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
VT++ETPPM+ VG VGYIETP GL
Sbjct: 63 VTVLETPPMIVVGAVGYIETPFGL 86
>AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB,
isoform B protein.
Length = 403
Score = 179 bits (435), Expect = 5e-45
Identities = 91/173 (52%), Positives = 111/173 (64%)
Frame = +1
Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
P AL+ VWA+H+SE+CRRRFYKNWY W D+LG+KSIE DF+KM+R
Sbjct: 83 PFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLR 142
Query: 421 YCSVVRVIAHTQMKLLKQRQKKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQDE 600
YC V+RVIAH+Q++L+KQRQKKAH+MEIQL K +VF QDE
Sbjct: 143 YCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDE 202
Query: 601 MIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSFT 759
MIDC+GVTKG+ + HTKKL P + + RKVACIGAWHP RVS T
Sbjct: 203 MIDCVGVTKGKGFKGVTSR-WHTKKL-PRKTHKGLRKVACIGAWHP-SRVSTT 252
Score = 162 bits (394), Expect = 5e-40
Identities = 72/84 (85%), Positives = 77/84 (91%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+VEA
Sbjct: 3 FYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEA 62
Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
VT++ETPPM+ VG VGYIETP GL
Sbjct: 63 VTVLETPPMIVVGAVGYIETPFGL 86
>AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA,
isoform A protein.
Length = 416
Score = 179 bits (435), Expect = 5e-45
Identities = 91/173 (52%), Positives = 111/173 (64%)
Frame = +1
Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
P AL+ VWA+H+SE+CRRRFYKNWY W D+LG+KSIE DF+KM+R
Sbjct: 96 PFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLR 155
Query: 421 YCSVVRVIAHTQMKLLKQRQKKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQDE 600
YC V+RVIAH+Q++L+KQRQKKAH+MEIQL K +VF QDE
Sbjct: 156 YCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDE 215
Query: 601 MIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSFT 759
MIDC+GVTKG+ + HTKKL P + + RKVACIGAWHP RVS T
Sbjct: 216 MIDCVGVTKGKGFKGVTSR-WHTKKL-PRKTHKGLRKVACIGAWHP-SRVSTT 265
Score = 162 bits (394), Expect = 5e-40
Identities = 72/84 (85%), Positives = 77/84 (91%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+VEA
Sbjct: 16 FYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEA 75
Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
VT++ETPPM+ VG VGYIETP GL
Sbjct: 76 VTVLETPPMIVVGAVGYIETPFGL 99
>AE014297-1266|AAF54611.1| 125|Drosophila melanogaster CG4863-PC,
isoform C protein.
Length = 125
Score = 162 bits (394), Expect = 5e-40
Identities = 72/84 (85%), Positives = 77/84 (91%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+VEA
Sbjct: 3 FYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEA 62
Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
VT++ETPPM+ VG VGYIETP GL
Sbjct: 63 VTVLETPPMIVVGAVGYIETPFGL 86
Score = 44.4 bits (100), Expect = 2e-04
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +1
Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKN 318
P AL+ VWA+H+SE+CRRRFYKN
Sbjct: 83 PFGLRALVNVWAQHLSEECRRRFYKN 108
>AE014297-1263|AAF54612.2| 161|Drosophila melanogaster CG4863-PD,
isoform D protein.
Length = 161
Score = 162 bits (394), Expect = 5e-40
Identities = 72/84 (85%), Positives = 77/84 (91%)
Frame = +2
Query: 2 FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+VEA
Sbjct: 16 FYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEA 75
Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
VT++ETPPM+ VG VGYIETP GL
Sbjct: 76 VTVLETPPMIVVGAVGYIETPFGL 99
Score = 51.6 bits (118), Expect = 1e-06
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1
Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWY 324
P AL+ VWA+H+SE+CRRRFYKNWY
Sbjct: 96 PFGLRALVNVWAQHLSEECRRRFYKNWY 123
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,062,295
Number of Sequences: 53049
Number of extensions: 971811
Number of successful extensions: 2899
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2874
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4065385896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -