Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30095
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   1.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   4.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   4.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -3

Query: 600 FILGKHRIEQG*VSPDV 550
           F++G+HRI +G  +PD+
Sbjct: 404 FVVGQHRILKGPANPDI 420


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -3

Query: 600 FILGKHRIEQG*VSPDV 550
           F++G+HRI +G  +PD+
Sbjct: 110 FVVGQHRILKGPANPDI 126


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 189 MVTASTISFLLIFEPGRSGSLTTWVI 112
           MV   TI +++IF  G  G++TT  +
Sbjct: 39  MVIPLTIIYMIIFVTGIFGNITTCTV 64


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 302 RRQSSDICSAQTVKRAVVHEGSQCIQQHRHKPSEESR 192
           RR+SS IC    V  +V +E          KPS   R
Sbjct: 379 RRRSSLICDVYGVNESVSYERGSMTVSVTSKPSTMER 415


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 703 FRKVACIGAWHPFLRVSFTCSSCWVQKRVIHP 798
           FRK   I  WH  L  +   +SC+ ++    P
Sbjct: 77  FRKPLPIEPWHGVLNATVLPNSCYQERYEYFP 108


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 703 FRKVACIGAWHPFLRVSFTCSSCWVQKRVIHP 798
           FRK   I  WH  L  +   +SC+ ++    P
Sbjct: 77  FRKPLPIEPWHGVLNATVLPNSCYQERYEYFP 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,247
Number of Sequences: 438
Number of extensions: 6083
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)