Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30094
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    28   1.6  
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    27   3.8  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   6.6  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   8.7  

>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 210 FGVSHLPGSVGRWWPQSCRFFR-HLALELTD*HFPR 106
           FG+  LP +VG+WW  S  + R H+ ++  D  FP+
Sbjct: 203 FGIV-LPYAVGKWWYGSRTYTRDHVHVDTVDEWFPK 237


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 448 TKYLHPRFIFRKNVINEHKNVLNGVVLADMRQEVEKDFGTGIGIL 314
           +KY  P+F+F K  ++E + + +G+ +  M   V  + G  I +L
Sbjct: 46  SKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDML 90


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 223 QLI*VWRISLARICRTLVAAIMSIFSSPSVGI 128
           Q I  WR+     C   ++ I+S+FSS   GI
Sbjct: 492 QTILFWRLQPLEACIFFISVIVSVFSSIENGI 523


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 125 VNSNAR*RKNRHDCGHQRPTDPG-K*DTPNSD*LAVI 232
           VN NA  RKN  D   Q P  P  K   PN+D   V+
Sbjct: 62  VNENAEERKNSRDLRKQLPDRPKFKKRIPNNDSWVVV 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,349
Number of Sequences: 5004
Number of extensions: 57358
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)