Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30093
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 125 3e-29
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 32 0.42
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 31 0.98
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 31 0.98
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 30 2.3
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 29 3.9
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 29 5.2
08_02_0802 + 21386248-21387468 29 5.2
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 29 5.2
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 29 5.2
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 28 9.1
02_02_0408 + 9901892-9902004,9903777-9903862,9905019-9905129,990... 28 9.1
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 125 bits (302), Expect = 3e-29
Identities = 57/83 (68%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRKGAGSVF SHT RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60
Query: 199 VHFRDPYKFKTRKELFIAPKPLH 267
V FR P+++K +KELF+A + ++
Sbjct: 61 VTFRHPFRYKHQKELFVAAEGMY 83
Score = 76.6 bits (180), Expect = 2e-14
Identities = 48/105 (45%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Frame = +3
Query: 402 ASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSRQQSMVGIVAGGGRIDKPIFESWKGHTT 581
ASG++A VI HNPD +R+KLPSGAKK++PS ++M+G VAGGGR +KP+ ++ +
Sbjct: 129 ASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAY-H 187
Query: 582 SNKVKRN-WLAIM*RGVGH*NLLSIPSRVVVTNHTL*GKASTGQR 713
+VKRN W + RGV N + P NH G AST +R
Sbjct: 188 KYRVKRNCWPKV--RGVAM-NPVEHPHG--GGNHQHIGHASTVRR 227
Score = 75.8 bits (178), Expect = 3e-14
Identities = 29/46 (63%), Positives = 39/46 (84%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLAR 400
YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E +GDRG AR
Sbjct: 83 YTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFAR 128
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 32.3 bits (70), Expect = 0.42
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 398 RGLWKLRHCDWT 433
+GLWK RHCDWT
Sbjct: 71 QGLWKCRHCDWT 82
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 31.1 bits (67), Expect = 0.98
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +1
Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
T P+ L L SV P R C+ +A+ + E+D L+ K I Q+ R
Sbjct: 173 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLR 232
Query: 592 SNVTGW 609
N+T W
Sbjct: 233 DNLTLW 238
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 31.1 bits (67), Expect = 0.98
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +1
Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
T P+ L L SV P R C+ +A+ + E+D L+ K I Q+ R
Sbjct: 391 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLR 450
Query: 592 SNVTGW 609
N+T W
Sbjct: 451 DNLTLW 456
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +1
Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
T P+ L L SV P R C+ +A+ + E+D L K I Q+ R
Sbjct: 172 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLR 231
Query: 592 SNVTGW 609
N+T W
Sbjct: 232 DNLTLW 237
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +1
Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
T P+ L L SV P R C+ +A+ + E+D L K I Q+ R
Sbjct: 150 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLR 209
Query: 592 SNVTGW 609
N+T W
Sbjct: 210 DNLTLW 215
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +1
Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
T P+ L L SV P R C +A+ + E+D L K I Q+ R
Sbjct: 177 THPIRLGLALNFSVFYYEILNSPDRACTLAKQAFDEAISELDTLGEESYKDSTLIMQLLR 236
Query: 592 SNVTGW 609
N+T W
Sbjct: 237 DNLTLW 242
>08_02_0802 + 21386248-21387468
Length = 406
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 399 VASGNFATVIGHNPDA--KRTRVKLPSGAKKVLPSRQQSMVGIVAG-GGR 539
V G G DA +RTR + P+G + VL SR++ + AG GGR
Sbjct: 137 VVDGEMVLAAGDLSDAAYRRTRARRPAGPRPVLLSRREHVAMRDAGRGGR 186
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +1
Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
T P+ L L SV P + C+ +A+ + E+D L K I Q+ R
Sbjct: 167 THPIRLGLALNFSVFYYEILNSPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLR 226
Query: 592 SNVTGW 609
N+T W
Sbjct: 227 DNLTLW 232
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 535 PPPATIPTMLCCLDGRTFLAP-DGSFTLVRL-ASGLCP 428
PPPA++P+ C R +P G+ L+RL G CP
Sbjct: 16 PPPASLPSTACTSSSRRRASPWGGAGRLIRLRLRGHCP 53
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 435 NPDAKRTRVKLPS--GAKKVLPSRQQSMVGIVAGGGRIDKPI 554
+P + RTR PS GA K +G+ GG R+ PI
Sbjct: 45 SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86
>02_02_0408 +
9901892-9902004,9903777-9903862,9905019-9905129,
9905182-9905307,9905546-9905673,9906634-9906726,
9907873-9908059,9908877-9909637
Length = 534
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -2
Query: 494 WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGHVPDDLYHPFSLQDCTQWYP 342
WQ ++ L + LS+ S HS V + +PFSL D W P
Sbjct: 217 WQMVIIKELKLANTNLSMAFGSEHSRAYRVHRVTEKAAYPFSLSDGGGWSP 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,295,896
Number of Sequences: 37544
Number of extensions: 548705
Number of successful extensions: 1360
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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