Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30093
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             140   1e-33
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)        83   2e-16
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06)                  29   5.3  
SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)              28   9.3  
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    28   9.3  
SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)                   28   9.3  
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  140 bits (339), Expect = 1e-33
 Identities = 64/83 (77%), Positives = 72/83 (86%)
 Frame = +1

Query: 19  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
           MGRVIR QRKGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1   MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60

Query: 199 VHFRDPYKFKTRKELFIAPKPLH 267
           V FRDPY++K RKELF+A + ++
Sbjct: 61  VVFRDPYRYKLRKELFVATEGMY 83



 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 45/76 (59%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
 Frame = +3

Query: 405 SGNFATVIGHNPDAKRTRVKLPSGAKKVLPSRQQSMVGIVAGGGRIDKPIFESWKGHTTS 584
           SGN+ATVI HN + KRTRVKLPSG KKV+PS  +++VGIVAGGGRIDKP+ ++ + +   
Sbjct: 130 SGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDKPMLKAGRAY-HK 188

Query: 585 NKVKRN-WLAIM*RGV 629
            K KRN W  +  RGV
Sbjct: 189 YKAKRNCWPRV--RGV 202



 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 34/46 (73%), Positives = 41/46 (89%)
 Frame = +2

Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLAR 400
           YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR
Sbjct: 83  YTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLAR 128


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 34/46 (73%), Positives = 41/46 (89%)
 Frame = +2

Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLAR 400
           YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR
Sbjct: 41  YTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLAR 86



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 30/41 (73%), Positives = 37/41 (90%)
 Frame = +1

Query: 145 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPKPLH 267
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A + ++
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMY 41



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 24/36 (66%), Positives = 30/36 (83%)
 Frame = +3

Query: 405 SGNFATVIGHNPDAKRTRVKLPSGAKKVLPSRQQSM 512
           SGN+ATVI HN + KRTRVKLPSG KKV+PS  +++
Sbjct: 88  SGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRAL 123


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
 Frame = -1

Query: 372  FSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV----*RLRSNEEL---LPCLELVW 214
            F+S L T +P+   P G+TF T +V F    +NW +     R+ +++EL   L  LE +W
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSGRVATDKELVRVLSSLEYLW 1121

Query: 213  IAEVYNSQRCTS--TRVMD 163
            I   + +    S  TR+MD
Sbjct: 1122 IRGRWTNLTDPSLKTRLMD 1140


>SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 461 YSCTLSIRIVSNHSGEVSRGHV 396
           Y+CTL+I +   H GE+ RG V
Sbjct: 11  YACTLNINVGVKHPGEMFRGEV 32


>SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06)
          Length = 336

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -3

Query: 523 TIPTMLCCLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEATCQTTSITHFLFKIA 356
           T+   +C L         G FTL   ++G+C +T  +   A CQ+ S++     +A
Sbjct: 131 TLSAGVCTLSAGVCTLSVGVFTL---SAGVCTLTAGQLVSAACQSVSLSACTLSVA 183


>SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)
          Length = 1642

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 608 GHNVTWCWPLKPVEHSLTGGGNQSHIIG*GFH 703
           G +VTW W      H++    +Q  II  GFH
Sbjct: 351 GDSVTWLWENTVNSHNIQQASHQRTIIPDGFH 382


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 296 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLAR 400
           A L+ G+  P+  +P GT+V N+E   G   +LAR
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLAR 144


>SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)
          Length = 653

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -3

Query: 583 LVVWPFQLSKIGLSIRPPPATIPTM----LCCLDGRTFLAPDGSFTLVRLAS 440
           LVV PF LS++ + +  P  T   +    +  ++ R    PDG   L  LAS
Sbjct: 597 LVVLPFPLSRVSVEMNDPKRTFRLLGADSIAVVESRLTSEPDGPCNLYILAS 648


>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 535 PPPATIPTMLCCLDGRTFLAPDGSFTLVRLASGLCPITVAKFPE 404
           PPP  IP ++  + GR+F+    +  +V   SG  P+T+ K  E
Sbjct: 361 PPPIDIPNLMIPIRGRSFV----NDKIVEEKSGDSPLTIKKTSE 400


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,143,199
Number of Sequences: 59808
Number of extensions: 596492
Number of successful extensions: 1338
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)