Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30092
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.9  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   6.8  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   6.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.8  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 233 NMSTIGIFIERYCNPCHRKLCCSI 304
           N   I +++ R C  C  K C S+
Sbjct: 228 NNCEIDMYMRRKCQECRLKKCLSV 251


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 393 CGCCRKAINRDRKKRNWCLPVMYD 464
           C  C+K  + +R  +    P++YD
Sbjct: 172 CDLCQKTKSSNRPHQGPLTPILYD 195


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 657 SSPSWERLTVCFSQPSGLLERPKASNYTPPLHGVFPINFTSHF 529
           SS   + L+ C+S+  G    P      P L    P N T+++
Sbjct: 30  SSACTDDLSSCWSEDMGSFSLPLDLEPLPSLFPFSPCNNTANY 72


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -2

Query: 603 LERPKASNYTPPLH 562
           ++RPK+++ +PP H
Sbjct: 270 MQRPKSASLSPPPH 283


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,528
Number of Sequences: 336
Number of extensions: 4119
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)