Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30092
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 27 3.2
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 4.2
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 4.2
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 26 5.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.5
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 25 7.3
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 7.3
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 25 7.3
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 7.3
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb... 25 9.7
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 9.7
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 421 LLIALRQQPHIYSDGSYASI*SLAYNALRHDKCAITSSS 305
+L L + H+YS + A+I +L ++ R+ CA T SS
Sbjct: 217 MLWDLNESTHLYSLEAKANINALVFSPNRYWLCAATGSS 255
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3
Query: 348 YASDYIEAYDPSEYMCGCCRKAINR 422
Y + P Y CG C++ INR
Sbjct: 401 YCLKCFQVKPPRSYHCGACKRCINR 425
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = +2
Query: 161 YNVWNVCTERDKVTYCLDCCL*EMNMSTIGIFIERYC 271
Y +W CT+ D + C+ C+ + G E C
Sbjct: 733 YTIWTHCTDMDSMDNCVYLCIQKFESYGWGASSEMEC 769
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 507 CLSVPTSPKYLKPCSHT*PEGTSSSSFC 424
CL+VPT P Y+K + +GT ++ C
Sbjct: 377 CLTVPTPPSYVK-SDFSLEDGTDAALIC 403
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 306 DELVIAHLSCLKALYASDYIEAYDPSEYMCGCCRKAIN 419
DEL + H SCL AL SD + D + G R+ N
Sbjct: 2515 DELTVYHKSCLDAL--SDIYYSLDEHDLYHGLWRRRAN 2550
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +2
Query: 236 MSTIGIFIERYCNPCHRKLCCSIR*TC---YCT 325
+S++ C+ CH+ + C + TC YCT
Sbjct: 301 LSSLSTNNNHLCDNCHKPVNCEVEDTCKEAYCT 333
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 606 LLERPKASNYTPPLHGVFPIN 544
L+ER N P LHG+FP++
Sbjct: 556 LVERLHDPNLVPYLHGLFPVD 576
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 255 LSSDIATLVTGNCVAPLDELVIAHLS 332
+S IA +V+ C APLD L + +S
Sbjct: 132 ISGGIAGIVSRTCTAPLDRLKVMLIS 157
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 505 SFCANKS*VSKTMQSYITGRHQFLFFLS 422
SFC S V K + Y++G + FFL+
Sbjct: 262 SFCQLFSNVDKAHKGYVSGSEAYSFFLA 289
>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -1
Query: 604 SGKAKGLKLHTSSAWRFSNKFYFPFLAGLA--LSLSFCANKS*VSKTMQSYITGRHQF 437
+ K L + A R+ +FY P + + F +K + + Q Y+ GRH F
Sbjct: 22 NSKVFALASSNAVAQRWGKRFYAPIETETPHKVGVEFEESKDRIFTSPQKYVQGRHAF 79
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 336 LKALYASDYIEAYDPS 383
L AL+A+DYIEA D S
Sbjct: 353 LTALFAADYIEALDGS 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,296
Number of Sequences: 5004
Number of extensions: 66585
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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