Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30092
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0106 + 6814391-6817007,6817086-6817462                           30   1.4  
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161...    28   5.7  

>02_02_0106 + 6814391-6817007,6817086-6817462
          Length = 997

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -1

Query: 313 SSSNGATQFPVTRVAISLDKDSYCRHVHLLETTV*TICYLV 191
           SSSN    FP+ R   +++KD + +H+ L+ + V +I  LV
Sbjct: 612 SSSNSLQNFPICRARANINKDLFGKHIALI-SAVASIILLV 651


>04_03_1049 +
           22015053-22015083,22015770-22015885,22016013-22016108,
           22016229-22016285,22016468-22016620,22016754-22016838,
           22017097-22017187,22017324-22017488,22017813-22017932,
           22018020-22018104,22018234-22018402,22019055-22019173,
           22019250-22019440,22019746-22019957,22020905-22021500,
           22022538-22022658,22023439-22023868,22024412-22024797,
           22024976-22025071,22025380-22025432,22026915-22027061,
           22027139-22027309,22027880-22027962,22028049-22028247,
           22028668-22028789,22029752-22029818,22029960-22030010,
           22030768-22031001,22031263-22031451,22032455-22032646,
           22032742-22032936
          Length = 1673

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 478 ILRTCWHRKTGTMLALPKMGSKIYW 552
           + R  WH   G ++ +PK G ++Y+
Sbjct: 17  LFRELWHACAGPLVTVPKRGERVYY 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,762,014
Number of Sequences: 37544
Number of extensions: 416701
Number of successful extensions: 914
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)