Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30092
         (661 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058688-1|AAL13917.1|  395|Drosophila melanogaster LD40777p pro...    45   8e-05
AE014296-1990|AAF50037.2|  395|Drosophila melanogaster CG7351-PA...    45   8e-05

>AY058688-1|AAL13917.1|  395|Drosophila melanogaster LD40777p
           protein.
          Length = 395

 Score = 45.2 bits (102), Expect = 8e-05
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 300 PLDELVIAHLSCLKALYASD--YIEAYDPSEYMCGCCRKAINRDRKKRNWCLPVMY 461
           PLDE+V AHL  L  L      Y+EAY      CG   + + +  K  NWCLP+MY
Sbjct: 56  PLDEVVSAHLKVLYHLAQEPPGYMEAYTQQSAACGAVVRLLQQ-LKDENWCLPLMY 110



 Score = 41.5 bits (93), Expect = 0.001
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
 Frame = +1

Query: 142 GTLNQYIQCVERMYRTGQGNILSRLLSLRDEHVYNRNLYRA--------ILQPLSQEIVL 297
           GT+N Y+  V    +   G  L+  LSLRD HV N NLY A         L+P   E+V 
Sbjct: 3   GTVNNYLSGVLHAAQDLDGESLATYLSLRDVHVQNHNLYIAQPEKLVDRFLKPPLDEVVS 62

Query: 298 LH*MNLLLHTYHVLRHYMQVIILRHTIHQSICVAAVVKLL 417
            H + +L H       YM+         QS    AVV+LL
Sbjct: 63  AH-LKVLYHLAQEPPGYMEAY-----TQQSAACGAVVRLL 96


>AE014296-1990|AAF50037.2|  395|Drosophila melanogaster CG7351-PA
           protein.
          Length = 395

 Score = 45.2 bits (102), Expect = 8e-05
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 300 PLDELVIAHLSCLKALYASD--YIEAYDPSEYMCGCCRKAINRDRKKRNWCLPVMY 461
           PLDE+V AHL  L  L      Y+EAY      CG   + + +  K  NWCLP+MY
Sbjct: 56  PLDEVVSAHLKVLYHLAQEPPGYMEAYTQQSAACGAVVRLLQQ-LKDENWCLPLMY 110



 Score = 41.5 bits (93), Expect = 0.001
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
 Frame = +1

Query: 142 GTLNQYIQCVERMYRTGQGNILSRLLSLRDEHVYNRNLYRA--------ILQPLSQEIVL 297
           GT+N Y+  V    +   G  L+  LSLRD HV N NLY A         L+P   E+V 
Sbjct: 3   GTVNNYLSGVLHAAQDLDGESLATYLSLRDVHVQNHNLYIAQPEKLVDRFLKPPLDEVVS 62

Query: 298 LH*MNLLLHTYHVLRHYMQVIILRHTIHQSICVAAVVKLL 417
            H + +L H       YM+         QS    AVV+LL
Sbjct: 63  AH-LKVLYHLAQEPPGYMEAY-----TQQSAACGAVVRLL 96


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,025,232
Number of Sequences: 53049
Number of extensions: 737302
Number of successful extensions: 1500
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)